Malus sylvestris (European crab apple): 126593142
Help
Entry
126593142 CDS
T09027
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126593142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126593142
03012 Translation factors [BR:
msyl03012
]
126593142
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126593142
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
126593142
Translation factors [BR:
msyl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
126593142
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
T2SSE
DUF5128
nSTAND3
Rad17
AAA_19
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
126593142
NCBI-ProteinID:
XP_050115007
LinkDB
All DBs
Position
12:complement(4279263..4286134)
Genome browser
AA seq
1037 aa
AA seq
DB search
MSVRLLLGATTSCPLPRHLLAAPKIFAFRPGISTLAMSGRTNFQGGRRGGPNSGGGRRGG
GRGGGGRGGGGRGGEQRWWDPVWRAERLRQQAVQMEVLDETEWWGKMEQMKNGAEQEMVI
KRNFSRNDQQILYDMAYQLGLYFHAYNKGKALVVSKVPLPDYRADLDERHGSTQKEIKMS
TETANRVGSLLHSSPSQGEISVSGPSGSGQGNRQTSASVITSKPVAQLEPDNVNEKEKLS
LQLKEKQEKMKVSNSLKAMQSFREKLPAFKMKSEFLKAVSENQVLVVSGETGCGKTTQLP
QFILEDEISRLHGADCNIICTQPRRISAVSVAARISSERGENLGETVGYQIRLESKRTAQ
TRLLFCTTGVLLRQLVQDPELTGVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLIL
MSATINADLFSKYFGNSPTIHIPGLTFPVAELFLEDILEKTRYAVKSEYDNFEGGNSRRR
RQQDSKKDPLTELFEDADIDVQFKNYSTATRKSLEAWSGSQLDLGLVEATIEHICRNERD
GAILVFLTGWDDISKLLDKIKGNRFLGDPTKYMVLPLHGSMPTVNQREIFDRPPPNKRKI
VLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQ
PGVCYRLYPKMIHDAMLQYQLPEILRTPLQELCLHIKSLQLGAVGSFLAKALQPPDSLAV
QNAIELLKTIGALDDTEELTPLGRHLCTLPLDPNIGKMLLMGSIFQCLNPALTIAAALAH
RDPFVLPINRKEDADAAKRSFAGDSFSDHIALVKAFEGWKDAKQNGAGEGKSFCWENFLS
PVTLQMMEDMRIQFLDLLSNIGFLDKSRGANAYNQYSHDLEMVCAVLCAGLYPNVVQCKR
RGKRTAFYTKEVGKVDIHPASVNAGVHLFPLPYMVYSEKVKTTSIYIRDSTNLSDYALLL
FGGSLIPSKTGEGIEMLGGYLHFSASKSVLELIRKLRGELDKLLNRKIDNPGLDISSEGK
AVVSAVVELLHSQNVQY
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtgcgcttactccttggcgcaacaacaagctgcccgcttccccgacacctcctc
gccgcgcccaaaatcttcgcgtttcgccctgggatctcgacactcgccatgtccggacgc
accaacttccaaggcggtcgccgaggcggccctaactctggcggaggccgccgcggtggc
ggtcgcggtggcggcggcagaggtggaggcggccgcggcggagaacagcgctggtgggac
ccggtatggcgcgcagagcgactgaggcagcaggctgtccagatggaagtgcttgatgag
accgaatggtggggaaagatggagcagatgaagaacggagcggagcaggagatggtaatt
aagcgtaattttagccggaatgatcagcaaattctatatgacatggcttatcaactgggg
ctttacttccatgcatacaataaagggaaggctttggtggtcagcaaagttccattgccg
gactaccgggcagatcttgatgagcgccatggttccacacagaaagagattaaaatgtct
acagagactgccaatagagttgggagtcttttgcacagctcgccgtcacagggggaaata
tctgtcagtgggccttctgggtcagggcagggaaacagacaaacttcagctagcgtaatt
acgagtaaacctgtagcccagttagagcctgataatgttaatgagaaagagaaactcagc
cttcaacttaaggagaaacaggaaaaaatgaaggtgagcaatagtttaaaagcaatgcaa
tcgtttcgagaaaagcttcctgctttcaaaatgaagtccgagtttctgaaagctgtttca
gaaaatcaggtcttggtagtctctggggagacaggttgcggaaaaacaacacagcttccg
caatttattctagaagatgagatctcacgtctgcatggtgctgattgcaacataatatgc
acacaacctcgtcgtatttctgctgtatctgttgcagctcgtatatcctctgaaagggga
gagaatcttggtgaaactgttggttatcagatccgtcttgaatcaaagcgtactgctcaa
acacgactgttattttgcaccactggagtgttacttcgacagttggttcaagacccagaa
ttaacgggcgtgagccacttgctagttgatgaaattcatgaaagaggcatgaatgaggac
tttttactcataattttgcgtgaccttcttcctcggcgtccagatctacgattaattcta
atgagtgctaccatcaatgccgacttgttctccaaatactttggaaattccccaacaata
catataccaggattaacttttcctgtggcagagttatttcttgaagatattctggagaaa
actcgttacgctgtcaagtcagagtatgacaactttgaggggggaaattccaggagaagg
agacagcaagattccaagaaagatcctttaactgaattatttgaggatgccgatattgat
gttcagttcaaaaattacagcacagctacaagaaagtctcttgaagcttggtctggttca
cagcttgatttggggctggtggaggcgacaattgaacatatatgtcgcaatgagagagat
ggagcaattcttgtattccttacaggctgggatgacatatcaaagttacttgacaaaatt
aagggaaatagattccttggagatcccacaaaatatatggttcttcccctgcatgggtca
atgcctaccgtcaatcaacgagagatatttgatcgtcctccccctaataaaagaaaaatt
gtgctagcaacaaacatagccgagagtagtatcaccatagatgatgttgtgtatgtcata
gactgcggaaaggcaaaggaaaccagttatgatgctttaaacaagttggcttgtctatta
ccttcatggatttcaaaggcttcagcacatcagaggcgagggcgtgctggccgtgtgcaa
cctggagtttgttacagactatatccgaaaatgatccatgatgcaatgctccaatatcaa
ttacctgaaatcctccggacgcctttgcaagagctatgcctccacatcaaaagtttgcaa
cttggagctgttgggtcatttttggcaaaggcacttcagccaccagattctcttgcagtt
caaaatgcaattgaacttctcaaaaccattggagctttagatgacacagaggagcttacc
ccgcttggtcgccatctttgcactctaccattggatccaaacattgggaagatgctttta
atgggttctatatttcaatgcctcaatcctgctttaacaattgcagctgctctcgctcat
cgtgacccatttgtactaccaataaataggaaagaggatgctgatgctgcaaagaggtcc
tttgcgggtgattctttcagtgatcacatagctcttgtgaaagcttttgaaggatggaaa
gatgcaaaacaaaatggagcgggagaaggaaagtcgttctgctgggagaactttttatcc
cctgtaacattgcagatgatggaagatatgaggatccagtttcttgatctattatcaaat
attggctttcttgacaaatccaggggtgctaatgcttacaatcaatacagccatgacttg
gagatggtgtgtgcggtcctgtgtgctgggctctatccgaatgtcgttcagtgtaaaaga
agaggaaagcggacagcattctatactaaggaagtcggtaaagttgatatccatcctgca
tcagtcaatgctggggttcatttattccctctcccttacatggtttatagtgaaaaggtg
aagacaaccagcatttacatccgagactctacgaatttatcagattatgctctacttcta
tttggtggtagtcttatccctagcaagaccggggagggcattgagatgcttggaggttac
cttcatttctctgcatcaaagagtgttttagaattgattcggaaactgcgtggtgaactt
gacaagcttttgaacaggaagattgacaacccaggattggacatctccagcgagggaaag
gcagttgtgtctgctgtggtagagttgctgcatagtcagaatgtacaatattga
DBGET
integrated database retrieval system
