KEGG   Malus sylvestris (European crab apple): 126593437
Entry
126593437         CDS       T09027                                 
Symbol
LOC126593437
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
msyl  Malus sylvestris (European crab apple)
Pathway
msyl03030  DNA replication
msyl03410  Base excision repair
msyl03420  Nucleotide excision repair
msyl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:msyl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    126593437 (LOC126593437)
   03410 Base excision repair
    126593437 (LOC126593437)
   03420 Nucleotide excision repair
    126593437 (LOC126593437)
   03430 Mismatch repair
    126593437 (LOC126593437)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:msyl03032]
    126593437 (LOC126593437)
   03036 Chromosome and associated proteins [BR:msyl03036]
    126593437 (LOC126593437)
   03400 DNA repair and recombination proteins [BR:msyl03400]
    126593437 (LOC126593437)
DNA replication proteins [BR:msyl03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    126593437 (LOC126593437)
  DNA Replication Termination Factors
   ELG1-RFC complex
    126593437 (LOC126593437)
Chromosome and associated proteins [BR:msyl03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    126593437 (LOC126593437)
DNA repair and recombination proteins [BR:msyl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     126593437 (LOC126593437)
  Check point factors
   HRAD17(Rad24)-RFC complex
    126593437 (LOC126593437)
SSDB
Motif
Pfam: RFC_C DNA_pol3_delta2 RCF1-5-like_lid AAA AAA_lid_RFC1 Rad17 Sigma54_activ_2 Mg_chelatase RuvB_N AAA_22 ABC_tran AAA_29 DUF815 AAA_23 nSTAND6 AAA_2 AAA_5 AAA_24 RsgA_GTPase T2SSE AAA_16
Other DBs
NCBI-GeneID: 126593437
NCBI-ProteinID: XP_050115472
LinkDB
Position
12:complement(1098541..1102646)
AA seq 354 aa
MLWVDKYRPKTLDQAIVHQDIAQNLKKLVVEQDCPHLLFYGPSGSGKKTLIIALLRQIFG
PSADKVKVENRAWKVDAGSRTIDIELTTLSSTNHIELNPSDAGFQDRYIVQEIIKEMAKN
RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSR
CLNVRINSPTEDQIVKVLEFIGKKEGLQLPSGFVARIAEKSNRSLRRAILSLETCRVQEY
PFTSDQAIPPMDWEEYVSEIASDIMKEQSPKRLYQVRQKLYELLLNCIPPEIILKRLLFE
LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHLEAFVAKFMSIYKAFLIEAFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgttgtgggtcgacaagtaccgacccaaaaccctagaccaggcaattgtccaccaagat
atcgcccaaaacctcaagaaactcgtcgtggagcaggactgcccccatttgctcttttat
ggcccttctggttccggcaagaaaaccctaatcatcgcccttcttcgtcagatattcgga
cccagtgccgacaaggtgaaggtggaaaacagggcatggaaagtcgatgctgggagtaga
acgattgatatagagctgactacattatcaagcaccaaccatattgaactgaaccccagt
gatgcagggtttcaagacagatacattgttcaagagataattaaagaaatggctaaaaat
agacccattgacacaaaagggaaaaaaggatataaagtcctagtgctgaatgaagttgac
aaactttcaagggaagcgcagcattctcttcgaagaactatggagaaatatagtgcttat
tgccggctaatactatgctgtaacagttcttcaagggttactgaagcaatcaggtctcgg
tgtcttaatgtacgaataaattcaccgacagaagatcagattgtgaaggtattggagttc
attggaaagaaagaagggctgcaacttccttcgggatttgttgctcgtatagctgaaaaa
tcaaataggagcttaaggagagctatattgtcattggaaacttgtcgtgttcaagagtat
ccgtttacaagtgaccaggcaataccacctatggattgggaagaatatgtttctgaaatt
gcttctgatataatgaaggagcaaagccctaaaaggctttatcaagtgcggcaaaagttg
tatgagctgctgcttaattgtattcctccggagatcatcttgaagagacttctttttgag
ttattgaagaagttggatgcggagttgaagcacgaggtttgtcattgggctgcatattat
gaacataggatgcgtcttgggcaaaaagccatatttcaccttgaagcgttcgtggcaaag
ttcatgagcatttataaggctttcctcatcgaagcgtttggctga

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