Malus sylvestris (European crab apple): 126593437
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Entry
126593437 CDS
T09027
Symbol
LOC126593437
Name
(RefSeq) replication factor C subunit 3
KO
K10756
replication factor C subunit 3/5
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03030
DNA replication
msyl03410
Base excision repair
msyl03420
Nucleotide excision repair
msyl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
126593437 (LOC126593437)
03410 Base excision repair
126593437 (LOC126593437)
03420 Nucleotide excision repair
126593437 (LOC126593437)
03430 Mismatch repair
126593437 (LOC126593437)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msyl03032
]
126593437 (LOC126593437)
03036 Chromosome and associated proteins [BR:
msyl03036
]
126593437 (LOC126593437)
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126593437 (LOC126593437)
DNA replication proteins [BR:
msyl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
126593437 (LOC126593437)
DNA Replication Termination Factors
ELG1-RFC complex
126593437 (LOC126593437)
Chromosome and associated proteins [BR:
msyl03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
126593437 (LOC126593437)
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
126593437 (LOC126593437)
Check point factors
HRAD17(Rad24)-RFC complex
126593437 (LOC126593437)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC_C
DNA_pol3_delta2
RCF1-5-like_lid
AAA
AAA_lid_RFC1
Rad17
Sigma54_activ_2
Mg_chelatase
RuvB_N
AAA_22
ABC_tran
AAA_29
DUF815
AAA_23
nSTAND6
AAA_2
AAA_5
AAA_24
RsgA_GTPase
T2SSE
AAA_16
Motif
Other DBs
NCBI-GeneID:
126593437
NCBI-ProteinID:
XP_050115472
LinkDB
All DBs
Position
12:complement(1098541..1102646)
Genome browser
AA seq
354 aa
AA seq
DB search
MLWVDKYRPKTLDQAIVHQDIAQNLKKLVVEQDCPHLLFYGPSGSGKKTLIIALLRQIFG
PSADKVKVENRAWKVDAGSRTIDIELTTLSSTNHIELNPSDAGFQDRYIVQEIIKEMAKN
RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSR
CLNVRINSPTEDQIVKVLEFIGKKEGLQLPSGFVARIAEKSNRSLRRAILSLETCRVQEY
PFTSDQAIPPMDWEEYVSEIASDIMKEQSPKRLYQVRQKLYELLLNCIPPEIILKRLLFE
LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHLEAFVAKFMSIYKAFLIEAFG
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgttgtgggtcgacaagtaccgacccaaaaccctagaccaggcaattgtccaccaagat
atcgcccaaaacctcaagaaactcgtcgtggagcaggactgcccccatttgctcttttat
ggcccttctggttccggcaagaaaaccctaatcatcgcccttcttcgtcagatattcgga
cccagtgccgacaaggtgaaggtggaaaacagggcatggaaagtcgatgctgggagtaga
acgattgatatagagctgactacattatcaagcaccaaccatattgaactgaaccccagt
gatgcagggtttcaagacagatacattgttcaagagataattaaagaaatggctaaaaat
agacccattgacacaaaagggaaaaaaggatataaagtcctagtgctgaatgaagttgac
aaactttcaagggaagcgcagcattctcttcgaagaactatggagaaatatagtgcttat
tgccggctaatactatgctgtaacagttcttcaagggttactgaagcaatcaggtctcgg
tgtcttaatgtacgaataaattcaccgacagaagatcagattgtgaaggtattggagttc
attggaaagaaagaagggctgcaacttccttcgggatttgttgctcgtatagctgaaaaa
tcaaataggagcttaaggagagctatattgtcattggaaacttgtcgtgttcaagagtat
ccgtttacaagtgaccaggcaataccacctatggattgggaagaatatgtttctgaaatt
gcttctgatataatgaaggagcaaagccctaaaaggctttatcaagtgcggcaaaagttg
tatgagctgctgcttaattgtattcctccggagatcatcttgaagagacttctttttgag
ttattgaagaagttggatgcggagttgaagcacgaggtttgtcattgggctgcatattat
gaacataggatgcgtcttgggcaaaaagccatatttcaccttgaagcgttcgtggcaaag
ttcatgagcatttataaggctttcctcatcgaagcgtttggctga
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