Malus sylvestris (European crab apple): 126593507
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Entry
126593507 CDS
T09027
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126593507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msyl03021
]
126593507
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126593507
Transcription machinery [BR:
msyl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
126593507
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
126593507
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
126593507
NCBI-ProteinID:
XP_050115558
LinkDB
All DBs
Position
12:1705117..1711943
Genome browser
AA seq
1062 aa
AA seq
DB search
MEMESSRRPFSRSNEPGLKKPRLAENPNGRAFGQRPGGGANPVLSRFRVSDRDVGSDDPN
RGDGGYVPQPLQHQELVSQYKTALAELTFNSKPIITNLTIIAGENVHAAKSVAATVCGNI
IEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVEPPIHQSMRHLFGTW
KGVFPAQTLQMIEKELGFSSTANGSSSVAATSRPDSQSQRPAHSIHVNPKYLERQRLQQP
ARAKGMASDFSGVMANSIDDDAERPARAASISAGRPWVDPAVKMHRSNTDALSDRVHEEN
IGAEYGEYEYGSDLHRNSNPGIGRIGGKITETLPTQRNGFNIKHGLTNYSAPKSTNADPR
LKTAPGIATRNSGGLSSSWKNSEEEEFMWDDMNSRLTDHGPPDISSNSRKDHWASDDSEK
LGFGGQFRKPKGGNDYASTADMDTSANPTEQKDLSALGQRMSSPWTLQDSIGIDRLTPSG
TPVISSVHSERYASSLSGLSTSGDSSVARMGSRAQVASSRIGTSSLGFNAAAGPTGALGK
QQLQSVRTASPSGQSSMHQYSPSPTSAVHPRHHSQSLADQDFAEDPLPIPTPNVRLGSKA
KSQPQDLSSSIPDIQSRHKYPFRQQPDSIESESFGHTKKPHVPQVSTFSTPSTVGDSIPD
LSNVLAAESSGQLNTSSLLAAVMKTGILSDKSITCSLPNLNRRDMGHIPSQSGVQPPLQS
GPSPTLALPGPKVASAPSSGHLSGENSPASSNVSQKKVAHLPIPPSQPPSSLDGSASASS
TVVSNASDPISNLLSSLVAKGLISASKSESPTPVPSQKLTELHNKGLGAPASKSVSVSPV
SVSVSPSRPVTSQTDASLPEPVAKTSAALPQSTKTEIQNLIGVAFKPDIIREFHPAVIDE
LFNDLPYTCSICGLRLKLKERLERHLEWHALKNPEGSGSVMASRKWYPDLTSWVAGRTVP
PLVPEAINSIDEPNEMMDIDEPIVPADENQCVCVICGDIFEDFYCQERDEWMFKGASYMS
IPSAAGKMETTEESVLKGPIVHANCTVESSLSDSHVKLEPDA
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagagctcgcgtaggccgtttagcagatcgaatgaaccaggcttgaagaag
ccccgattggccgaaaacccgaatggccgagcctttggtcagagacccggtggcggagct
aatccagtgctgtcaaggttcagagtgagtgatagagacgtggggagcgatgatccgaat
cgcggggatgggggctatgtgccgcagccactgcagcatcaggagcttgtgagccagtac
aagacggcgttggcggagctcaccttcaattcaaagccaattattaccaatttgacgata
attgccggcgagaatgtccacgccgcgaagtcggtggcggcaaccgtatgcggcaacatt
attgaggttcccagtgagcagaagttaccatcactttatcttttggacagtattgtaaag
aatatcggaagggattatatcaaatattttgctgccagactccctgaggtattctgcaag
gcatataggcaggttgaacctcctatacatcaaagcatgcggcatctttttggaacatgg
aaaggagtgtttcctgctcagacgcttcagatgattgagaaagaactcggattttcttct
acagcaaatggttcatcctctgtagcagcaacatcaagaccagattcgcagtcacaacga
ccagcacatagcattcatgtgaatcccaaatatttggaaaggcaacggcttcagcagcca
gcaagggcaaaaggaatggctagcgacttttctggggttatggcaaactcaattgatgat
gatgcagagaggccagccagagcagcaagtatcagtgctggacgaccatgggttgatcct
gctgttaaaatgcatcgttccaatacagatgcacttagtgatcgtgttcatgaggagaac
attggtgctgaatatggagaatacgaatatggttcagatcttcacaggaattcaaacccg
ggaattggaagaattggtgggaagattacagaaacactacccacccaaagaaatggtttt
aatatcaagcatggacttacaaattactcggcacctaaatctacgaatgctgatcctcgc
ttaaagacagcaccaggcattgcaactagaaacagtggtggcctgtctagtagctggaag
aattctgaggaagaggagttcatgtgggatgatatgaactcaagattaacagatcatggc
cctccagatatttctagtaactcaagaaaagatcactgggcttctgatgattcagagaaa
ttgggctttggaggtcagtttcgtaaaccaaaaggtggaaatgattatgcatcaacagct
gatatggatacctctgctaatcctactgaacagaaagacctatctgctcttggtcagcga
atgtcatcaccttggacattgcaggactctatcggtattgacaggctgaccccttctggt
actcctgtcattagttcggttcattcagagcgttatgcttcaagtttaagtgggctatcg
acaagtggagattcttctgtggccaggatgggaagtagagcacaagtagcgtcttctcga
attggaacgtcaagtctagggtttaatgcagcagcagggcctactggagctttaggaaaa
caacagcttcagtctgtgagaactgcatcaccatctggacagtcatcgatgcaccaatat
tctccctcacctacatctgcagtacatccccgtcatcactcgcaaagtttagctgaccaa
gactttgctgaggaccctttgccaattccaactcccaatgttagattgggcagcaaagca
aaatcacagcctcaagatctatcttcgtcaattcctgacatccaatcaaggcacaaatac
ccctttcgacaacaaccagacagtatagagtctgaatctttcggtcacactaagaagcct
catgtgccacaggtctctactttttcaactccctcaactgttggagattctataccagat
ctttcaaatgtccttgctgcagaatcctcaggacagttgaacacaagtagtttgttggct
gctgttatgaagactggaatactctctgacaaatcaattacttgtagcctgcccaatttg
aatcgtcgggacatgggacatattccatcacagtctggtgttcagcctcccttgcaaagt
ggaccctcccctacccttgcactcccagggcccaaggttgcatcagcaccttcatcaggt
cacctttctggtgagaactcgccagcttcctcaaatgtatcacagaagaaggtagcacat
ctgccaattccacctagccaacctccttcctctcttgatggcagtgcgtcagcaagttca
actgtggtgagtaatgcctcagatccaatttcaaaccttttaagctccttagttgcaaag
ggtttgatatctgcatcaaagtcggagtcacccactcctgtgccatcccaaaagctgact
gaactgcacaacaagggcctaggtgcacctgcctccaaatcagtgtcagtatctccagtt
tcagtttcagtctctccaagtcgtcctgttacatcccaaactgatgcgtctctcccagaa
cctgtagctaaaacatctgctgccttacctcaatctaccaagacagaaatacaaaaccta
ataggcgttgcctttaagccagatataatccgagaatttcatccagctgtgatagatgaa
ctttttaatgaccttccatatacgtgtagcatatgtggccttaggctcaaacttaaagaa
cggcttgagagacatttggaatggcatgctttgaaaaatcccgaaggcagtggttcagtt
atggcatcaaggaagtggtatccagatttaacgagctgggttgctggaaggacagtaccc
cctttggtaccggaggccatcaattcaatagacgagcctaatgagatgatggatattgat
gagcccatagttccagcagacgaaaaccaatgtgtatgtgttatatgtggtgatattttt
gaagatttttactgtcaagaaagggatgaatggatgttcaaaggagcttcgtacatgagt
attccatctgcggccggtaagatggaaaccacagaggagagtgttttgaaaggtcccatt
gtgcatgcaaattgtacagtggaaagttcactctctgatagccatgttaaattggaacca
gatgcttag
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integrated database retrieval system
