Malus sylvestris (European crab apple): 126593817
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Entry
126593817 CDS
T09027
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126593817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msyl03041
]
126593817
Spliceosome [BR:
msyl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
126593817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
WDR55
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_EIPR1
NBCH_WD40
PRP4
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_SCAP
WD40_RFWD3
Beta-prop_Nup120_160
Beta-prop_IFT140_1st
WD40_like
Beta-prop_WDR75_2nd
Beta-prop_SPT8
Beta-prop_NUP159_NUP214
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
126593817
NCBI-ProteinID:
XP_050115897
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Position
12:9948604..9962549
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AA seq
542 aa
AA seq
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MEEENPLSTLPEPSVAAVPIAPVRAPPLRPPPPINGEARTSTSDSDDSDSEEPPRATGVS
GGEYEISEESRVVRERQEKAMQELLMKRRASALAVPTNDMAVRARLRRLGEPITLFGERE
MERRDRLRMIMARLDSQGELEKLLKVHEEEEAAASAAAVEDGDDQIIQYPFYTEGSKALL
NARIDIAKYSIRSAALRLERARRKKDDPDEDMDAELDLVLEQAKSLELDCSEIGDDRPLS
GCSFSHDGQLLATCAISGVAKLWSMPEAKKVTTLKGHTERLTDIQFSPVHNLLATASADR
TARLWNTEGTQLLTFKGHLDRLARIAFHPSGKYLGTTSFDQTWRLWDVETGEELLLQEGH
SRSVYGIDFHPDGSLVASSGLDALTRVWDLRTGRSILALEGHVKKVLALSFSANGYYLAT
GGEDNTCRIWDLRKKKSIYTIPAHSNLISQVKFEPQEGYFLVTASYDLTAKIWSARDFKP
VKTLSGHEAKVTSLDISGDGQQIATVSHDRTIKLWSSRTNKKDQAMDVDYSTNEKDQAMD
AD
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggagaatcctctatcaactttaccggagccatctgttgcagcagtcccaatt
gctccagtccgcgctcctcccctcagaccgccgccgccaataaatggggaagccaggacg
agcacaagtgactccgatgattccgactcggaggagcctccacgagctaccggcgtttcg
ggtggggagtacgagatatcggaagagagcagagtggtgagagagcggcaggagaaagca
atgcaggaactgctgatgaagcgccgtgcttctgctcttgctgttcccaccaacgacatg
gccgtgagggctcgtcttcggcggctcggcgaacccattactctctttggggagagagag
atggaaaggcgagacaggttgaggatgatcatggcgaggctggattcgcaaggggagttg
gagaagttgttgaaagttcatgaggaggaggaggctgcagcttctgctgctgcagtggag
gatggtgatgatcaaattattcagtaccctttttacactgaagggtccaaagctttgttg
aatgctaggattgacattgccaagtactccattaggagtgcggccttgcggctcgaacgg
gctcgaagaaagaaggacgacccagatgaggatatggatgcagagttggacttggttttg
gagcaggcaaaaagtttggaacttgattgcagtgagattggggatgataggccactttcg
ggctgttctttctcacatgatgggcaactgcttgccacttgtgctataagtggagtggcc
aagttgtggagcatgcctgaagcaaagaaggttaccactttaaagggacacacagagcga
ctgactgatattcagttttctcctgtgcataacctcttggcaactgcctctgctgaccgg
actgcaaggttgtggaacacagaaggaactcagctgttgacatttaagggccatttggac
cgtctggcacgaattgccttccatccatcaggtaagtacttgggtacaactagctttgac
cagacttggaggttatgggatgtagaaactggtgaagagttgcttctacaagaaggtcac
agtaggagtgtctatgggatagacttccatcctgatggatcattggtggcatcctctgga
ctggatgcacttactcgtgtttgggacctccgtactggtagaagtattcttgccttggaa
ggccatgtcaagaaagttcttgcactcagtttctcagcaaatggctattatttagccact
gggggtgaagacaacacttgcagaatatgggatttaagaaaaaagaaatccatatacacc
attccagcacattccaatctcatatcacaggtcaaatttgagccacaagagggatatttc
cttgtaactgcttcatatgatttgacagcaaagatatggtcagcccgagattttaagcct
gtcaagacgctttctggacatgaagcaaaagttacatctttggatatttctggagatggg
caacagattgctactgtatcacatgaccgaaccatcaaactgtggtccagccgtaccaac
aagaaggatcaagcaatggatgtggattacagtaccaatgagaaggatcaggcaatggat
gcggattag
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integrated database retrieval system
