Malus sylvestris (European crab apple): 126593935
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Entry
126593935 CDS
T09027
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38-like
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03013
Nucleocytoplasmic transport
msyl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126593935
03015 mRNA surveillance pathway
126593935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126593935
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126593935
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
126593935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
126593935
NCBI-ProteinID:
XP_050116062
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All DBs
Position
12:15450424..15456513
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AA seq
514 aa
AA seq
DB search
MAESDAPAPATATAEPSAPSEKSSPEASTTAPPPAQKPETKRWADEEDDPPEEPEKKDDA
PAPSTSEPEVNLAELKITENKFLDDPEDSNISAVTDGDTPYTSASSFEDLKLSPEVLKGL
YVEMQFKKPSKIQAITLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDPNLKAPQAL
CICPTRELAIQNMEVLQKMGKYTGITAECAVPTDRTSSTSTQSRPPVSAQIVIGTPGTIK
RLMSTKKLGVSKVKVLVFDEADHMLAEDGFKDDSLRIMKDIERFSSHCQVLLFSATFNEK
VTNFVSKVIKGGGNQLFVKKEELSLEAVKQYKVYCPDELAKIDVIKSKIFELGEKLGQRI
IFVRTKNSARMLHQQLVQDGYAVTTIQGALNAEDRDKIVKEFKDGLTQVLISTDLLARGF
DQQQVNCVVNYDLPIKYREGPRTRDPPEPDYEVYLHRIGRAGRFGRKGAVFNLICGDWDE
LTMSKIEQYFNTPVTEVQNTEEAFEGALKAAGLL
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggctgagagcgacgcccccgcccccgccacagcgaccgcagaaccgtcggcgccgtca
gaaaagtcgtctcccgaggcgtctaccaccgctcctccgccggcgcagaagcctgaaaca
aaacggtgggccgacgaagaggacgaccctccagaggagcccgagaagaaagacgacgcg
cctgcgccctctacttccgagccggaggtcaaccttgccgaattgaagattacggagaac
aagttcctcgacgaccccgaagactctaatatcagtgccgttactgacggagacacgccg
tacacatcagcgagtagtttcgaggatctgaaactgtcgccggaggtactgaagggtttg
tatgtagagatgcaattcaagaagccgagcaaaatccaggcgatcactttgccaatgatt
ttgacccctccctataaagatcttattgctcaggcgcataatggttcgggcaaaaccact
tgtttcgtgctcgggatgctcagccgtgtcgatcccaacctcaaagctcctcaggcgctc
tgcatttgccccaccagagagttggccattcagaatatggaagttcttcagaagatgggg
aagtacacagggataactgcagagtgtgctgtccctacagataggacgagttctacctcg
acgcaatccaggccaccagtgtcggcacaaattgtgattggaactcctggtacaattaag
agattaatgtcgacgaaaaaactcggtgtgagcaaggtcaaggttcttgttttcgacgag
gctgatcacatgcttgccgaggatggctttaaggatgattctttgaggataatgaaggac
atagagaggtttagctctcactgccaggtgcttttattttctgctacatttaatgaaaaa
gtcacaaactttgtttcaaaagtgatcaaaggtggtggtaatcaactctttgtaaagaaa
gaagagctatctttggaggctgtgaagcagtacaaggtgtactgccctgatgaattggca
aagatcgacgtcatcaaaagtaaaatatttgaactgggagagaaattggggcagagaatt
atatttgtacggacaaaaaatagcgcaagaatgttgcatcagcaacttgttcaagatggt
tatgcagttactactattcaaggtgccctcaatgctgaagatagagacaaaatagtcaaa
gagttcaaagatggtttaacccaagttcttatatcaactgacctactcgctcgaggcttt
gatcaacagcaggttaattgtgttgtcaattatgatcttccaatcaaatatagagagggc
cccaggacacgtgatcctcccgaacctgattatgaggtctacttgcatagaattggaagg
gcaggacgttttggtcgcaagggggctgtgtttaacttgatttgcggtgattgggatgaa
ttgaccatgtcaaagattgagcagtattttaacaccccagtaacagaggttcaaaacacc
gaagaagcttttgaaggcgctcttaaagctgccggtttactgtaa
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