Malus sylvestris (European crab apple): 126594032
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Entry
126594032 CDS
T09027
Name
(RefSeq) uncharacterized protein LOC126594032
KO
K07573
exosome complex component CSL4
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126594032
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126594032
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
126594032
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
126594032
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GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
CHASE5
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
126594032
NCBI-ProteinID:
XP_050116191
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All DBs
Position
12:31501576..31504179
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AA seq
196 aa
AA seq
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MGENSEWVTPGEVLGKASKFKAGRGAYVSTDKLTVYASLTGSRRILSPPSDSPDQRPTVE
VTGHKAHGAIPEPGSVVIARVTKVMERMASADILCLGTKSVREKFSGIIRLQDVRATEID
KVDMLSSFRLGDIVRAHVLSLGDARAYYLSTAKNELGVISAQSAASGETMVPISWTEMQC
PRTGQIEQRKVAKVGG
NT seq
591 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaatagtgagtgggtaaccccaggggaagttctcggtaaagcctccaagttc
aaagcaggcagaggtgcctacgtgtccaccgacaagctcaccgtctacgcttccctcact
gggtcccgccgtatcctatcccccccttccgactcgcccgaccagagacccactgtggaa
gtaactggtcacaaggcccatggtgccattccagagcctggatcagttgtcattgctaga
gttaccaaagtgatggaaaggatggcttctgctgatattttgtgtcttggcacgaaatct
gtgcgagaaaagtttagtggcataattaggcttcaagatgtaagagccaccgaaattgat
aaagtggatatgctttcgtcttttcgcctgggtgacattgtcagagctcatgttctgtcc
cttggagatgctagggcttattatctgtcaactgcaaagaatgaattgggtgttatttcg
gcacagagtgctgcatcaggtgaaacaatggtaccaataagctggacagagatgcagtgc
cccaggacagggcaaatcgagcaaagaaaggtcgctaaggtcggaggatga
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