Malus sylvestris (European crab apple): 126594196
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Entry
126594196 CDS
T09027
Name
(RefSeq) pre-mRNA-splicing factor 38-like
KO
K12849
pre-mRNA-splicing factor 38A
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126594196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msyl03041
]
126594196
Spliceosome [BR:
msyl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
126594196
Complex C
U4/U6.U5 tri-SnRNP related factors
126594196
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Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
HIND
Motif
Other DBs
NCBI-GeneID:
126594196
NCBI-ProteinID:
XP_050116372
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All DBs
Position
12:complement(27883399..27886571)
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AA seq
374 aa
AA seq
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MANRTDPSAKNIRGTNPQNLVEKIVRTKIYQNTYWKEQCFGLTAETLVDKAMELDHIGGT
FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNDDYKYVRILGAFYLRLTGTDTDAYQYL
EPLYNDYRKLRRKLPDGNFTLTHVDEVIDELLTKDYSCDIAMPRIKKRWTLEATGSLELR
KSALEEDFEEEEEKEENDQVDVMDEDVHDRDYYRGRSPARERDRDRRRDSHRYRDRDYDR
DYERDRDYDRDRGRERERDRDRDRDRDHYRLRDEKDYGRDRDRDRDRDWDRRGRDRGRRR
SHSRSRSRSRDRDGVDRDRRRHARSISPRRPDREEPKKKKEKKKEKKDDGTDHPDPEIAE
ANRLRASLGLKPLK
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaccgcacggacccgtcggcgaagaacataaggggaacgaacccccagaatctg
gtggaaaagatcgtacggacgaagatataccagaacacgtactggaaggagcagtgcttc
gggttgactgccgaaaccctagtcgacaaagccatggagctcgaccacatcggcggcacc
ttcgggggaaaccgcaagcccacgcctttcatgtgcctcgtgatgaagatgcttcagatc
cagccggagaaggagatcgtcatcgagttcatcaaaaacgacgattacaagtacgttcgg
atacttggtgcattttatttgcggcttacgggaactgatactgatgcataccagtaccta
gagcctttgtacaatgactatcggaagttgaggaggaaactgcctgatgggaattttacc
ttgacgcatgtggatgaggttattgatgaacttctcacaaaagattactcatgtgacatt
gcaatgccacgaattaaaaaaagatggactctcgaagcaactggttcattggaactcagg
aaaagtgctttggaggaggactttgaggaggaggaagagaaagaggagaatgatcaagtt
gatgtaatggatgaagatgtccatgatagggattattatcgtggtcgaagccctgccagg
gaaagagatagggatagaagacgcgacagtcacagatacagggaccgagattatgacaga
gattatgaaagggatagagattatgacagggatcgtggacgtgaaagagagagggacaga
gacagggatagggatcgagaccattatcggctaagagacgaaaaggattatggtcgtgat
agggatagggacagggatagggattgggacaggcgagggagggatcgtggcaggaggagg
agccattcaaggagcagaagtcgtagtagagatcgtgatggtgtggatagagatcgcagg
agacatgcccgcagcattagtcccaggagacctgatcgtgaggaaccgaagaagaagaaa
gaaaagaagaaggagaagaaggatgatggcacagaccatccggatccagagattgccgaa
gcaaacagactccgagcatctcttgggttgaaacccctgaagtag
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