Malus sylvestris (European crab apple): 126594445
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Entry
126594445 CDS
T09027
Name
(RefSeq) uncharacterized protein LOC126594445 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126594445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msyl03000
]
126594445
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126594445
04121 Ubiquitin system [BR:
msyl04121
]
126594445
Enzymes [BR:
msyl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
126594445
Transcription factors [BR:
msyl03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
126594445
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
126594445
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
126594445
Ubiquitin system [BR:
msyl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
126594445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
SSFA2_C
Baculo_IE-1
zf-UDP
zf-RING_2
zf-RING_UBOX
Rtf2
zf-C3HC4_3
FYVE
RRM_Nup35
Nup35_RRM_2
FA_synthesis
Motif
Other DBs
NCBI-GeneID:
126594445
NCBI-ProteinID:
XP_050116718
LinkDB
All DBs
Position
12:19095540..19101160
Genome browser
AA seq
808 aa
AA seq
DB search
MSEIGEKTCPICAEEMDLTDQQLKPCKCGYEVCVWCWHHIMEMAAKDGKEGRCPVCRTPY
DKEKIVGVAANCQKLVAEINVKRKQKKPKGSEVKKQHLTDVRVLQRTLVYVIGIPLNLAS
EDLLKRREYFGQYGKVLKVSISRTANGAIQQAPNNSCCVYISYSKEYEAARCIQSVHSFV
LDGRCLRASFGTTKYCHAWLKSVPCNNPDCWYLHDFGSQEDSFTKDELLSAFERSKDHQN
IGVTNNLNRHSVKGLPPPTAENSKAERSSATKHPSNITWNEVKSYRADGDSRTSIPAIAP
WVMQVTPSVPPATSSPGSERPLYQNPEKSSDLHPLSSEVVRNESSTHNVRSEESCEWLMT
EQVITKNGQAAISNTTSGALAERAPVSVTSNKNLCCPSPNNGIERDSRVTSTNLISNNNS
YCSSSNLSDKSIDIQGSRVAELYRTYEPTSVLPEMGLGKYSRGCETNKPSIHCSLSPDIG
ESGIISSILTMDLDAPDGSLSPLHNLVKLLGETDKECSLLRVQNSRKLLDKKQSRFSFAQ
QEDSCDNNIWNASKDYALSDLMGNKEYLVDVESNKFLGVPSFTSSKVSEVPRSIAPGFSV
PSRAPPPGFSSPPGFSSHLRPRRVDQAFDSSVNHLLQPSCIPTGYSGINGNVEINDPAIL
EVSEELLARGLMNKRANLSQFNSSEPDARLHMLRQQTTSAPQNLECQDHFMNRYSYLNDA
QRITPQQPDQFQPNPSSFVQPTSQHLSDMHLSNNDWVQWNRVNSVADLGISDLLRNDRLG
FNKLIPCYENMQSPTSYFSHLNNRSFEM
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaatcggagagaaaacgtgtccgatatgcgctgaggagatggatttgacggat
cagcagctgaagccgtgcaaatgcggttatgaggtatgtgtttggtgttggcatcacatt
atggaaatggcagcgaaggatggaaaggagggtcgctgtccagtatgccgtacaccttat
gacaaagaaaaaattgttggagtggcggcaaattgtcaaaagttggtggctgaaattaat
gtgaagcggaaacagaaaaaacccaagggatctgaagtaaagaagcagcatcttactgat
gttagagttctccaacggaccctagtatatgtgattggaatacctcttaacctagcgagt
gaagaccttctcaagcgaagggagtattttggccagtacggaaaggttttgaaggtttct
atctctcgtacagcaaatggggctatccaacaggctccgaacaacagttgttgtgtgtat
atatcatactcaaaagaatatgaagcagctcggtgcattcaatcagtacacagttttgtg
ttagatggtcgatgcttgagggcatcttttggaaccacaaagtactgccatgcatggttg
aaaagtgtgccttgcaacaatccagattgttggtatttgcatgattttggttctcaggaa
gatagttttaccaaggatgaattgctttcagcctttgaaaggagtaaagatcaccaaaat
atcggtgttacaaataatttgaatcggcattcagtgaaaggcttacctcccccaactgct
gagaatagcaaagccgaaagatcatcagctactaaacatccatcaaatattacttggaat
gaggttaagagttatcgtgcagatggtgactccagaacatctattcctgcaatagcacct
tgggtcatgcaagtcacccctagtgtgcccccagcaacaagttctccaggttctgaaagg
cctctttatcaaaatcctgagaaatcaagtgatcttcatcccctttcatcagaagtggta
cgcaatgaaagttctacccacaatgtaagatctgaagaaagctgtgagtggctaatgacc
gaacaggttatcaccaaaaatggtcaagcagctatatcaaatacaacttctggtgctcta
gcagaaagagctccggtcagtgtaacttccaacaaaaacttatgttgtccatcaccaaac
aatggcattgagcgggatagcagggtaacatccaccaacttgatcagcaacaacaacagt
tattgttcatcatcaaacttatcagataaatccattgatatccaaggcagtagagttgct
gaattgtataggacatatgaacctaccagtgtgttacctgagatgggattagggaagtac
tcgagagggtgtgaaaccaataagcccagcattcactgcagtctttctccagatatagga
gagagtggcataatctcaagtattttgactatggacttggatgcacctgacggttcttta
tctcctcttcacaatcttgtaaagttgttgggtgaaactgataaagagtgcagtctcctc
agagtacaaaattcacgaaaactgcttgataaaaagcagtccaggttctcatttgctcaa
caagaggattcttgtgataataatatatggaatgcatccaaggactacgccttatctgat
ttgatgggcaacaaggagtacttagtagatgtagagtctaataagtttcttggggttcct
tcttttacatcttctaaagtatcagaagttcctcgttcaattgcaccaggattttcagtg
ccaagtagagcaccacctccagggttttcttctcctccagggttttcttctcatttgagg
cctaggagggtggatcaggcttttgacagttcagtgaatcacttgttgcaaccatcatgt
ataccaactggttattctggtattaatgggaatgtcgagatcaatgatccagcaattttg
gaagtcagtgaggaactattggcaagagggttgatgaataagagagcaaatttatctcag
tttaactcttctgagccagatgctaggctccatatgctgagacagcagacaacttctgcc
ccgcagaacttagaatgtcaagaccacttcatgaatagatactcttacctaaatgatgca
caaagaattactccacagcagccagatcaattccagcccaatccatcttcatttgtgcaa
cccaccagtcaacacttaagtgacatgcatttatcaaataatgattgggtgcaatggaat
cgggtcaatagtgttgccgatcttggtatatcagatctactgagaaacgatcgactggga
tttaacaagctcattccctgttatgagaatatgcagtctccaacaagttacttcagtcat
ctaaacaacagatcatttgaaatgtga
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