Malus sylvestris (European crab apple): 126594921
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Entry
126594921 CDS
T09027
Name
(RefSeq) ruBisCO large subunit-binding protein subunit beta, chloroplastic isoform X1
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126594921
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126594921
03110 Chaperones and folding catalysts [BR:
msyl03110
]
126594921
03029 Mitochondrial biogenesis [BR:
msyl03029
]
126594921
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
msyl04147
]
126594921
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
126594921
Messenger RNA biogenesis [BR:
msyl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
126594921
Chaperones and folding catalysts [BR:
msyl03110
]
Heat shock proteins
HSP60 / Chaperonin
126594921
Mitochondrial biogenesis [BR:
msyl03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
126594921
Exosome [BR:
msyl04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
126594921
Exosomal proteins of other body fluids (saliva and urine)
126594921
Exosomal proteins of breast cancer cells
126594921
Exosomal proteins of colorectal cancer cells
126594921
Exosomal proteins of bladder cancer cells
126594921
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
126594921
NCBI-ProteinID:
XP_050117146
LinkDB
All DBs
Position
13:complement(3419767..3424058)
Genome browser
AA seq
614 aa
AA seq
DB search
MAFSPTPISAFSFTNIQKLPKRLSPSSAANSKGIPKDLIFNHDGLATKKLLAGVDMVAEL
VGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKQIELEDAVENVGVKLVRQAGAKTNDLAG
DGSTTAVVLAHGLITEGVKVTAAGMNPIQIARGIEKTAVALVAELKLMSREIEDHELADV
AAVSAGNDYTVGNMIYDALRQVGKKGVVTIESGKSTENDLQIVEGMQFDRGYLSPYFVTD
RKKMIVEFQDCKLLLVDKKITHPEELFKVLDNAVQEKYPVVIVAEGIEQEALTPVIRNKL
RGALKAAAIKAPAFGERKSHYLDDIAILTGATVVRDEMGIVLYDVGKEVLGTATKVVITK
DSTLIVTDGSTREAVEKRVSQIQKLVENTEEEFQKKILNERIARLSGGIAILQVGAQTQI
ELKDKQLRIEDALNATKAAIEEGVVVGGGCSLLRLSKKVDAIKELLDNKEQKIGAEIFKR
ALSYPVKLIAKNAGVNGSVVVEKVLSNDDMGYGYNAAKDCYEDLMKAGIMDPSKVVRCCL
ENAASVAKTFLTSDAVVVEIKETQPIPRGMPPKLPDIPRMPPPPPPDLASIPRRRRRATP
PMPMPTTGAGPLGF
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggcattttctccaactcccatctctgctttttccttcaccaacattcagaaactgccc
aaaaggctctctccatcttctgctgccaactcaaaaggcatacccaaagacctcatcttt
aaccatgatggtttagccacaaagaagcttctggcaggggtggacatggtggcagagctg
gttggagtgacattgggtccaaagggaaggaatgtggtgctgcagaataaatatggacct
cccaagattgtcaatgatggtgaaactgtactcaaacagattgagttggaggatgctgtg
gagaatgttggtgttaaactggtgaggcaagctggtgcgaaaacaaatgacctcgcagga
gacggttccaccacagctgtagttcttgctcatggtttaattactgaaggtgtgaaggtt
actgcagctggcatgaatcccattcaaattgctcgtgggattgaaaaaactgctgtggcc
ctcgttgctgaactcaaattgatgtccagagagattgaagatcacgagctagcagatgtt
gctgcagttagtgcaggcaatgattatacagttgggaatatgatttatgacgctcttcgt
caagtaggaaagaagggtgtggttaccattgaatcagggaaaagtacagagaacgaccta
caaattgtggaaggaatgcagttcgatcgtggatacttatcgccttattttgtcactgat
cgaaaaaaaatgatagtggagtttcaggactgtaagttacttttggttgacaagaaaatt
acacacccagaggagctgttcaaagtattggacaatgcagtacaagaaaagtatcctgtc
gtgatagttgcagagggcattgagcaggaagctttgactccagtgatcagaaacaaactc
aggggtgcgctgaaggcagctgctattaaggctcctgccttcggcgagcgcaaaagccat
tacttagatgacattgccattttgactggagcaacggtcgtgagagatgagatggggatt
gtcctatatgatgttgggaaggaggttttgggcactgctactaaggttgtgataacaaag
gattctacattgatagttaccgatggcagcacccgggaggctgtagaaaagagggtttca
cagatacaaaagcttgttgagaatactgaagaagaatttcaaaagaagatactaaatgaa
agaatagcaagattatcagggggaattgctattctgcaggtaggagcacaaacacaaatt
gagttgaaagataagcaacttagaattgaagatgctttgaatgcaaccaaggcagctatt
gaggaaggtgtggtagtcggtggtggctgtagccttctgaggctctctaaaaaggtggat
gctattaaagaacttttggataataaagaacagaagattggagcggagatcttcaagaga
gctctaagttatcctgtaaaactgatagctaaaaatgcaggtgtaaatggaagtgttgta
gtagagaaggttctgtccaacgatgacatggggtacggatacaatgctgcgaaagactgc
tatgaggacctaatgaaagccgggatcatggatccatcaaaggtagttagatgttgtttg
gagaatgcagcatcagtggccaaaacttttctgacatcggatgctgtggttgtcgaaatt
aaggaaacacagcccatcccaagaggaatgccgccaaaactgccggatatcccaagaatg
cctccaccaccaccaccagacctggccagtatcccaagaagaagaagaagggcaacacca
ccaatgcccatgccaaccacaggtgctgggcccttgggcttttaa
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