Malus sylvestris (European crab apple): 126595765
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Entry
126595765 CDS
T09027
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03013
Nucleocytoplasmic transport
msyl03015
mRNA surveillance pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126595765
09122 Translation
03013 Nucleocytoplasmic transport
126595765
03015 mRNA surveillance pathway
126595765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126595765
03041 Spliceosome [BR:
msyl03041
]
126595765
03009 Ribosome biogenesis [BR:
msyl03009
]
126595765
03012 Translation factors [BR:
msyl03012
]
126595765
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126595765
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
126595765
mRNA cycle factors
Stress granule specific factors
126595765
Spliceosome [BR:
msyl03041
]
Complex C
Other components
EJC/TREX
126595765
Ribosome biogenesis [BR:
msyl03009
]
Eukaryotic type
90S particles
Helicases
126595765
Translation factors [BR:
msyl03012
]
Eukaryotic type
Initiation factors
eIF-4
126595765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
AAA_22
Helicase_RecD
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
126595765
NCBI-ProteinID:
XP_050118030
LinkDB
All DBs
Position
13:399467..402253
Genome browser
AA seq
402 aa
AA seq
DB search
MAEAPARRVGGMGDEKLEFVTSDGIEPIMTFDQMGLRDDLLRGVYNYGFEKPSAIQQRAV
RPIIEGRDVIAQAQSGTGKTSMIALTVCQLVDTSSREVQALILSPTRELAAQTEKVILAI
GNFINIQAHSCIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDES
DEMLSRGFKDQIYDVYRYLPPELQVCLISATLPHEILEMTNKFMTEPVRILVKRDELTLE
GIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSAMHG
DMPQKERDAIMAEFRGGNTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSG
RFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggcaccggcgagacgtgtcggaggaatgggggatgagaagctggagttcgtg
acttccgacgggatagagcccatcatgaccttcgatcagatgggtttaagggacgatctc
ctccgaggcgtctacaactacggcttcgagaagccctccgccatccagcaacgggccgtc
aggcccatcatagagggtcgcgacgtcatcgcccaggcccagtccggtaccggcaagacc
tccatgattgccctgaccgtctgtcagcttgtcgacacctcctcccgagaggttcaggct
ttgatattgtctccgacgagggaattggcggcgcagacggagaaggtgatattagcaatt
gggaatttcataaatatacaagcgcattcttgcattggaggcaaaagcgtgggtgaggat
atccgaaagctcgagtatggcgttcatgtggtgtctggaactcctggcagagtctgtgat
atgatcaaaagaagaactctccgaactcgagccatcaaattattagttcttgatgaatct
gatgaaatgttgagcagagggttcaaggatcagatttatgatgtctatagatatcttcct
cctgagctccaggtatgcttgatttctgctacacttcctcatgaaattttggagatgacc
aacaagtttatgactgaacctgtaaggatccttgtcaaacgtgatgagttgacattggag
ggaattaagcaatttttcgtggccgtcgaaagagaggaatggaagtttgatactctttgt
gatctctatgatacccttacaattacacaagctgttattttctgcaacacaaagcgaaag
gtggactggctcaccgaaaagatgaggagtaataactttaccgtctctgcaatgcatgga
gacatgcctcagaaggaaagagatgctattatggccgagtttcgtggtggtaatactcgt
gtcctgatcacaaccgatgtttgggcccggggccttgatgttcagcaggtttctttggtt
atcaattatgatcttccaaacaatcgagagctatacattcatcgaattggtcgttctggc
cgtttcgggcgcaagggtgtggcaataaactttgtcaaaagtgatgatattaagattcta
agagacattgagcagtattacagtactcagattgacgaaatgccgatgaatgtcgcggac
ttgatatga
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