Malus sylvestris (European crab apple): 126596499
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Entry
126596499 CDS
T09027
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126596499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126596499
03012 Translation factors [BR:
msyl03012
]
126596499
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126596499
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
126596499
Translation factors [BR:
msyl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
126596499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
Dicer_dimer
NACHT
nSTAND3
AAA_19
ATPase
T2SSE
TFIIA
Motif
Other DBs
NCBI-GeneID:
126596499
NCBI-ProteinID:
XP_050119059
LinkDB
All DBs
Position
13:complement(2062914..2071281)
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AA seq
1257 aa
AA seq
DB search
MQFKAESAALTCELEVHLTLRFRRGDSFGHSSDLERRHFAASPCMPSAFLLLLHPSPPSL
QFPYASSPSPSHPKPIASSSKTSLLAMKDRPPSSYGSVYVPPHHRPRSAITTPNYTSPTS
VGAKLRDNQTAAALNQRSSTIGALAYYQTQQQQQQHFQKPKLQHSSAYDDGVSEEVSDRE
VELPSHPTQIPYSSDNEWERKFTTLLRDKEKQELVTREKKDRCDFEKIAALASRMGLYSH
LYSKVAVFSKVPLPNYRFDLDDRRPQREVTLPHGLLRRVEGYLGEFLSQKSRTKEDLSFS
ISNSSGSIATDEGLFEQPESFASSKGVMEKLLWRTSTQLRDKQQAWQESPQGRKMLELRR
SLPAYKEKDALLAAISRDQVVIISGETGCGKTTQIPQFILESEIEAVRGAVCSIICTQPR
RISAMSVSERVASERGEKLGDSIGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGV
THVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDSELFSSYFGRAQIIHVPG
FTYPVQTHFLEDVLEITGCKLTPYNQIDDYGQDKMWKMSKQAPRKRKSQIAFVVEDALKA
ADFKGYSLQTQESLACWNPDGIGFYLIEYLLCNICESEKPGAILVFMTGWDDINSLKEKL
HANPLLGDPSRVLLLACHGSMASTEQRLIFDEPEDGVRKIVLATNIAETSITINDVVFVL
DCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECYHLYPRCVYDAFAEYQ
LPEILRTPLQSLCLQIKSLNLGSISEFLSRALQSPELLAVQNAIEYLKITGALDEKENLT
VLGRYLTMLPVEPKLGKMLLLGAIFNCLDPVLTIVSGLSVRDPFLTPFDKKDLAEAAKSQ
FSRDNSDHLALVRAYEGWKVAERDFAGYDYCWKNFLSAQSMKAIDSLRKEFFSLLRDTDL
VDANTTTHNAWSYDEHLVRAVICCGLYPGICSVVHNEKSFSLKTMEDGQVLLYSNSVNAR
DSKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVLLLFGGSFSKGDTDGHLKMLGGYLEFFM
KPAVAEMYQCLKGELDQLIQIKLLNPRMDTHSYHELLSAMRFLLSEDQGEGRFVFGRQVL
ALSKSKPSVVAAQPALVSRTESGPGGDNSKSQLQTLLTRAGYNAPTYKTMQLKNSQFRAT
VEFNGMQIMGHPCNNKKSAEKDAAAEAIQWLVSGTQMGHEDINHMSMMLKRSKRDHN
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atgcagtttaaagccgaaagtgcagcgctgacgtgcgaactcgaagtacacttaactctt
cgcttccggaggggagactcattcggacattcctctgatctcgaacgacgccactttgct
gcctcaccttgcatgccctctgctttcctcctcctcctccacccatctcctccttctctg
caattcccatacgcgtcgtcgccgtcgccttcacatcccaaaccgattgcctcctcctcc
aaaacctcactcctggcgatgaaggaccggcctccttcctcgtacggctccgtctacgtc
cctccccaccaccgcccccgctccgccatcaccacccccaattacacctcccctacttca
gtcggcgccaagctccgcgacaaccagactgctgctgctctcaaccagaggagcagcacc
attggtgctctggcgtactaccagactcagcagcagcagcagcagcattttcagaagccc
aagcttcagcactcttctgcttacgacgacggcgtttctgaggaagtctccgatcgcgaa
gttgagttgccgtcgcatccgacacagattccttactcatctgataatgagtgggaacgg
aaatttaccacgctgttacgtgacaaggagaagcaagaattggttacgagggagaaaaaa
gatagatgcgactttgagaaaatagctgctttggcaagcagaatggggctttatagccat
ctatattcgaaagttgctgtttttagtaaggtcccactgccaaactacagatttgatctg
gatgataggcgccctcagagagaggtgaccttgcctcatgggttgctgaggagagttgag
ggatatcttggagagttcctttcccagaagtctaggacaaaggaagatctttccttttcg
atatcaaacagtagtggcagcattgctactgatgaagggctttttgagcaaccagaatca
ttcgcgtcaagtaagggtgttatggaaaagcttctttggcggacaagtacgcagctgcgt
gataagcaacaagcttggcaggaatctcctcaaggtagaaaaatgcttgaacttcgcaga
agtcttcctgcttataaagagaaggatgcattattggcagcaatttcacgagatcaggtt
gttatcatatcaggtgaaactggctgtggcaagactactcaaattccacaattcatttta
gaatctgagatagaagctgttcgtggagctgtttgtagtattatatgtacacagcctaga
cgaatatctgctatgtctgtttctgaaagagttgcttcagagagaggggagaaattgggt
gactcgattgggtataaggttcgcttagaaggtatgaaggggagggacactcgccttctc
ttttgcaccactggcattttgttgagaagattactagttgatagaaatttgaaaggtgta
actcatgtgattgttgatgaaattcatgaacgtggaatgaatgaagattttctgcttatt
gttctcaaggatctccttcctcggcgaccagaactgaggctgattttgatgagtgcaacc
ctagattctgagcttttctcatcctactttggcagagctcagataattcatgttccaggt
tttacatatccagttcaaactcattttctggaggatgttctggaaattacgggctgcaaa
ttaactccatacaatcagattgatgattatggtcaagataagatgtggaaaatgagcaaa
caggcaccaagaaagaggaaaagccaaattgcttttgttgttgaggatgcacttaaagca
gccgattttaaggggtatagtctacagactcaggagtctctagcatgttggaatcctgat
ggtattggtttttatctcatcgagtatctcttgtgcaatatctgtgagagtgaaaagcca
ggtgccattctagtttttatgactgggtgggatgacatcaattctctgaaggaaaagtta
catgccaatcctctattaggtgatccaagccgagtcttgttactagcatgccatggttct
atggcaagtactgagcagaggttaatatttgatgagcctgaggatggagtgaggaaaata
gtgctggctactaatattgctgagacaagcatcacgattaatgatgttgtttttgtactt
gattgtggaaaggcaaaagagacttcatatgacgcactgaataatactccttgtttactt
ccttcctggatttccaaggtttctgcccaacaaagaagaggaagagcaggacgtgtccag
cccggggaatgttatcatctctatcctagatgtgtgtatgacgcatttgcagagtatcag
ttaccagagattttgaggacacctctgcagtctctgtgtctgcaaataaaaagtttaaac
cttggaagcatttctgagttcttatctagggctctgcagtcaccagagttacttgcggtg
caaaacgccatagagtatttaaagatcactggggccttggatgagaaagagaatctgact
gttttaggacgctatctaactatgcttcctgtggagccaaaacttggaaagatgctcttg
ctaggcgccattttcaactgcctggatccagttttgactattgtttctgggcttagtgtc
agagatcctttcctaacaccatttgacaagaaagaccttgctgaggctgcaaaatctcag
ttttcccgagataatagtgatcaccttgcacttgtgcgggcctatgagggctggaaggtt
gctgaaagagactttgctggatatgactattgctggaagaattttctttcagcacaatcg
atgaaagctattgattcccttaggaaggagttcttctctttgcttagggatactgatctt
gttgatgccaacaccaccactcataacgcatggagttatgatgagcatctcgtccgtgca
gttatttgctgtggcctgtatcctggaatctgctctgttgtgcacaatgagaagtcattt
tcactgaaaacaatggaggatgggcaggtgctgctatactcgaactctgtcaatgctagg
gattccaaaattccatatccgtggctggttttcaatgagaagataaaggtgaactctgtt
ttcctacgggattcaacagctgtgtctgactcagtgctcctcctatttggtggaagtttt
tcgaaaggggataccgatggacacttgaaaatgctgggaggatatttggaattcttcatg
aagcctgctgtagcagaaatgtatcaatgcttaaaaggggaacttgaccagttaattcaa
atcaaactactgaaccccaggatggacacacacagttaccatgaacttctttctgcaatg
cggttcctgctttcggaggatcaaggcgaaggtagatttgtatttggccgccaggtcctt
gcactctcaaagtcaaagccatctgtggtggcagcacagccagccttggtttcaagaact
gaaagtggacccgggggtgacaattctaagagtcagctccagacattgctcacacgagca
ggatacaacgctcctacctacaaaactatgcaactgaagaacagccagttccgagctaca
gtggagtttaacggaatgcaaattatgggccacccgtgtaacaacaagaagagtgcagaa
aaagatgcggcagcggaggccattcagtggctggtgagtggaacacaaatgggccatgag
gacatcaatcacatgtcaatgatgttaaagagaagcaaaagggaccacaattaa
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integrated database retrieval system
