Malus sylvestris (European crab apple): 126597654
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Entry
126597654 CDS
T09027
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03040
Spliceosome
msyl04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126597654
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
126597654
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msyl03041
]
126597654
04121 Ubiquitin system [BR:
msyl04121
]
126597654
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126597654
Enzymes [BR:
msyl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
126597654
Spliceosome [BR:
msyl03041
]
Complex B
Other components
Prp19 complex
126597654
Complex C
Prp19-CDC5 complex
126597654
Ubiquitin system [BR:
msyl04121
]
Ubiquitin ligases (E3)
U-box type E3
126597654
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
126597654
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_DCAF12
NBCH_WD40
WD40_like
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_DCAF4
zf-Nse
U-box
KNTC1_N
PEP5_VPS11_N
PUMA_CC
DUF5046
Motif
Other DBs
NCBI-GeneID:
126597654
NCBI-ProteinID:
XP_050120425
LinkDB
All DBs
Position
13:20467169..20474054
Genome browser
AA seq
521 aa
AA seq
DB search
MNCALSGEVPEEPVVSKKSGLLFEKRLIERHISEYGKCPVTGEPLTADDIIPVQTGKIVR
PRPAQAASIPGMLGMFQLEWDSLMLANFAMEKQLHTARQELSHALYQHDAACRVIARLKK
ERDEARLLLAQAERQIPAQSTVTANAAVHSNGTPVADDQQGPGASNIRPGISASILEKMT
ECNVTLSQQRKMRQISPTLAPVDALERYTQISSHPLHRTSKPGILSIDIQSNKNLIATGG
VDTNAVIFDQTSAQIISTLSGHSKKVTSVKFVGQDDLFISGSADKTVRIWQGTDDGNYNC
RHILKDHTAEVQAVTVHATGDYFVTASLDSTWCFYDIASGLCLTQVEDASASEGGYTSVA
FHPDGLILGTGTSEALVKIWDVKGQSNVATFEGHVGAITAISFSENGYFLATAASDGIKL
WDLRKLRNFKKFTPYGAEPTNCVEFDYSGNYLAAAGSDIRIIQTGSVKSEWNTVKTFPDM
SGTGKTTSVKFGRDANYIAVGSMDRNLRIFGLPGDDSAMES
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgaactgcgcactatccggcgaggtgccggaggagcctgtggtctccaagaagtccggg
ttgctcttcgagaagcgtttaatcgagcgacatatctcggaatatggaaaatgcccggta
accggtgaaccacttaccgctgatgatatcattccagttcaaacggggaagatagtgagg
cccagacctgcacaagctgctagtattcctggaatgcttggaatgttccagcttgaatgg
gatagtttgatgctagccaactttgcaatggagaaacaactacatacagcaaggcaagag
ttgagtcatgctttgtatcagcatgatgccgcttgccgtgttattgcaagactcaaaaaa
gaaagggatgaagcaaggttattacttgcccaggctgagagacaaattcccgcacaatca
acagttacggcaaatgctgctgtccatagcaatggaacaccagttgctgatgaccagcaa
ggacctggtgcgagcaatatacgacctggaatatctgccagtatcctagagaagatgacc
gaatgtaatgtaactctttcacagcagcggaagatgcggcagatatccccaactttggct
ccagttgatgcgttggagaggtatactcagatatctagtcatcctcttcatagaacaagc
aaaccaggaattttatcaattgacattcaatctaacaagaacctcattgcaactggaggg
gttgatacaaatgctgtaatctttgatcaaacatcagcgcaaatcatatctactcttagt
ggtcattcgaagaaggttacaagcgtgaaatttgtaggtcaggatgatctgttcataagt
gggtcagcagacaagacagttcgcatatggcaaggcactgatgatgggaactataactgt
aggcacattttgaaggaccatactgcggaggtgcaagctgtcactgtacatgccacgggt
gactactttgtgactgcttctcttgatagtacatggtgcttttacgatattgcatctggg
ttatgtctaacacaggttgaggacgcttctgcttcggaaggcggctatacatctgtggca
tttcatcctgatggtctcattcttggaacaggcacctcagaggctctcgtgaaaatttgg
gatgtaaagggtcagtcaaatgttgcaacatttgagggacatgttggcgcaataactgca
atctccttctctgagaatggttactttcttgcgaccgcagctagtgatggcattaagttg
tgggatctacgcaaattgaggaacttcaagaaatttactccatacggtgctgaaccaaca
aactgtgttgaatttgactacagtggaaattaccttgctgctgcaggctctgatataaga
atcatccaaactggtagcgtgaaaagtgaatggaacactgtaaagactttccctgatatg
tctggcacaggtaaaacaacaagcgtgaagtttggacgagatgcaaattatattgcagta
ggatcaatggaccgaaaccttcgcatttttggcctgcctggcgacgatagtgcaatggag
tcgtga
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