Malus sylvestris (European crab apple): 126598368
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Entry
126598368 CDS
T09027
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126598368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126598368
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
126598368
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
126598368
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
126598368
NCBI-ProteinID:
XP_050120685
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All DBs
Position
14:3239424..3240568
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AA seq
282 aa
AA seq
DB search
MSSSGPPPPKPLSPRDILIRSVWSDNLESEFELIRSVIDDFPLISMDTEFPGVVVRPDPN
DPNYRHREPAAHYLMLKANVDRLNLIQVGLTLSDDSGNLPDLGTKNLYIWEFNFRDFDVA
RDAHAHDSVELLRRQGIDFEWNRDFGVDSVRFAALMMSSGLVCNDAVNWVTFHSVYDFGY
LVKVLTQRVLPDELSVFLNYVRIFFGSGVYDVKHLTRFCASLYGGLDRVCQTLNVERVAG
KSHQAGSDSLLTLHAFQRIREVYFPKNGIEQYAGVLYGLEVS
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcatccggccccccgccacccaagcctctgtcgccgcgagacatcctgatccgt
tcggtatggtccgataacctcgagtccgagttcgaactgatccgatccgtcatcgacgat
tttccgctgatttccatggatacggagttcccgggcgtcgtggtccgacccgaccccaac
gaccccaattaccgccaccgcgagcccgccgcgcactacctcatgctcaaggccaacgtc
gatcgcctcaatctgatccaggttggcctcaccctctcggacgacagcgggaatctgccc
gatttggggactaagaatctgtatatctgggaattcaatttccgggacttcgacgtcgcg
cgggacgcccacgcgcacgattcggtagagttgcttcgccggcaggggattgatttcgag
tggaaccgggatttcggggtagactcggttcggttcgcggcgctgatgatgtcgtcgggg
ctcgtctgcaacgacgccgttaactgggtcacgttccatagcgtctacgattttgggtac
ctggtcaaggtgttgactcagcgagtcttgccggacgagttgtcggtgttcttgaattac
gttaggattttctttgggtctggagtgtacgacgtgaagcacctgacgaggttctgcgcc
agcctctatggtgggttggaccgggtctgccagacactgaatgtggagcgggttgccggt
aagagccaccaggccgggtcggatagcctgctgaccctgcacgcgttccagaggatcaga
gaggtctactttccgaagaatgggatcgagcagtatgctggcgttttgtatggtctagag
gtttcttga
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