Malus sylvestris (European crab apple): 126598543
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Entry
126598543 CDS
T09027
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126598543
09123 Folding, sorting and degradation
03018 RNA degradation
126598543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126598543
03041 Spliceosome [BR:
msyl03041
]
126598543
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
126598543
mRNA degradation factors
5'-3' decay
Lsm complex
126598543
Spliceosome [BR:
msyl03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
126598543
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
126598543
NCBI-ProteinID:
XP_050120869
LinkDB
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Position
14:complement(30347374..30349508)
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AA seq
98 aa
AA seq
DB search
MSSGTGLESLVDQTISVITNDGRNIVGVLKGFDQSTNIILDESHERVFSTKEGVQQLVLG
LYIIRGDNISIVGELDADLDSTVEWSKMRAYPLKPVIH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtggcactggtcttgagtcactcgttgatcaaacaatttcagttatcacaaat
gatggacggaatattgtgggagtcttgaaaggctttgaccagtctactaatatcattctc
gatgaatctcatgaacgtgttttctctacaaaggagggtgttcagcaactcgtgttgggg
ttatatataatcagaggtgacaacataagcattgttggggaattagatgcagatcttgat
tctactgttgagtggtcaaagatgagagcttatcccctcaagcctgtcatccactga
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