KEGG   Malus sylvestris (European crab apple): 126598570
Entry
126598570         CDS       T09027                                 
Name
(RefSeq) histone deacetylase 6-like isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
msyl  Malus sylvestris (European crab apple)
Pathway
msyl03082  ATP-dependent chromatin remodeling
msyl03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:msyl00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    126598570
   03083 Polycomb repressive complex
    126598570
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:msyl03036]
    126598570
Enzymes [BR:msyl01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     126598570
Chromosome and associated proteins [BR:msyl03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     126598570
   HDAC complexes
    Sin3A-HDAC complex
     126598570
    BRAF-HDAC complex
     126598570
    REST complex
     126598570
    SHIP complex
     126598570
    MiDAC complex
     126598570
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     126598570
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    126598570
  Chromatin remodeling factors
   NuRD complex
    126598570
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 126598570
NCBI-ProteinID: XP_050120892
LinkDB
Position
14:24653112..24656257
AA seq 468 aa
MDSEGGASLPSGPDAKKRRVSYFYEPTVGDYYYGQGHPMKPHRIRMAHSLVVHYGLHRRM
EINRPFPAGPIDIRRFHADDYVDFLASVTPETLADSVHSRHLKRFNVGEDCPVFDGLLGF
CQASAGGSIGAAVKLNRQDADIAVNWAGGLHHAKKAEASGFCYVNDIVLGILELLKVHRR
VLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGAGTGKNYALNVPLN
DGMDDESFRSLFRPILRKVMEMYQPDAVVLQCGADSLSGDRLGCFNLSVRGHADCLRFLR
SFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNNLPYNEYYEYFGPDYTLHIAPSN
MENLNTPKDMEKIRNALLEQLTRIPHTPSVPFQTTPPTTKVPEEVEEKLDERPKPRIWNG
VIYDSDPEDDKHWIKFPTAARQHAVMDVWDDEDEMEEDKKHHHRHPSC
NT seq 1407 nt   +upstreamnt  +downstreamnt
atggactcagaaggcggagcgtcactgccgtcaggcccagacgcgaagaaacggcgagtg
agctacttctacgagcccaccgtcggcgattactactacggccaaggccacccgatgaag
ccccaccgtatccgcatggcccacagcctagtcgtccattacggcctccaccgtcggatg
gagatcaaccgcccctttcccgccggccccatcgacatccgccgcttccacgccgacgac
tacgtcgacttcctcgcctccgtcacccccgagaccctcgccgattccgtccactcccgt
cacctcaagcgcttcaacgtcggcgaggactgccccgtatttgacggcctcttgggtttc
tgccaggcctccgccggcggctcaatcggcgccgccgttaagctcaatcgccaggacgcc
gacatcgctgtcaactgggccggtgggctccatcacgccaagaaggccgaggcttctgga
ttctgctatgtcaatgatattgtgctcggcattcttgagctcctcaaggttcacaggcgt
gtgctttatgtagacattgatgtgcaccatggagatggagttgaggaggcattttacact
actgatagggtcatgactgtgtctttccataagttcggggatttctttcctggcaccggg
cacattaaagacgttggggcggggactgggaaaaactacgccctgaatgtcccgctaaat
gatggaatggatgacgagagttttcgtagtttgtttcggcccatcctccggaaagtcatg
gagatgtatcagccagacgcagttgttcttcagtgtggagcggattccttgtctggtgat
aggttggggtgcttcaacttgtctgtcagaggccatgcagattgtcttcgttttcttagg
tctttcaatgttcctctgatggtgttgggtggtggaggttatacaattcgtaatgtggcc
cgttgctggtgttatgagacagcagtggcggtcggggtggagcctgataataatttgcct
tacaatgaatactatgagtattttggaccagattacactcttcacattgccccatccaac
atggaaaatctaaacacgcccaaagatatggagaaaataaggaatgcactgctcgagcaa
cttactcgaatacctcatacacccagtgttcctttccagacaacaccaccaactacaaaa
gttccagaagaggtggaagagaaattggacgaaagaccaaagcctcgcatttggaacggc
gttatttatgactctgatcctgaagacgacaagcattggattaaattccccaccgctgct
cgtcagcacgctgttatggatgtgtgggatgacgaagatgagatggaagaagataaaaag
catcatcatcgtcatccttcgtgctga

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