Malus sylvestris (European crab apple): 126599636
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Entry
126599636 CDS
T09027
Name
(RefSeq) autophagy-related protein 16-like
KO
K17890
autophagy-related protein 16-1
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
126599636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
msyl04131
]
126599636
03029 Mitochondrial biogenesis [BR:
msyl03029
]
126599636
Membrane trafficking [BR:
msyl04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
126599636
Others
Specific organelles associated proteins
Auto phagosome
126599636
Mitochondrial biogenesis [BR:
msyl03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
126599636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
WDR90_beta-prop_4th
ANAPC4_WD40
ATG16
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_VPS8
Beta-prop_HPS5
Beta-prop_NWD2_C
Beta-prop_IFT122_1st
Beta-prop_WDR35_TULP_N
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_Vps41
eIF2A
WD40_RFWD3
WDR54
Cytochrom_D1
KNTC1_N
B-prop_COPA_B_2nd
PQQ_2
PEP5_VPS11_N
Ge1_WD40
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
126599636
NCBI-ProteinID:
XP_050121989
LinkDB
All DBs
Position
14:23932169..23935254
Genome browser
AA seq
509 aa
AA seq
DB search
MSQEEIAREAIKHALKALRRRHLAEEGAHAPAFIALSKPILHQGSEWKEKAENLEMELQQ
CYKAQSRLSEQLVVEVAESRTSKASLQEKEAAVANLQKELSEQRDECSQLAADLEEKVKA
LELVVSENKEIRAQLEEMSIRAKNAEAENKVLIDRWMLEKMKDAERLNEANALYEDMIER
LRASGLEKLARQQVDGVVRQSEEGAEYFLESTIPSTCKNRMPAHDGGCASILFEYNSGKL
ITGGQDGSIKMWDTNTGSLTRTLYGCIGSVLDLTITHDNRSIIAASSSNKLYAWDVNSGR
VRHTLTGHMDKVCAVDVSKFSSRHVVSAAYDRTIKVWDMQKGYCTNTIMFPKNCNALSFS
MDGQTICSGHVDGNLRLWDIEKGKLLSEVAAHSNAVTSISLSRNGNVILTSGRDNVHNLF
DMRSLEVCGTLRATGNRVASNWSRSCISPDDNYVAAGSADGCVYIWSISKADIVSTMKEH
TASVLCCSWSGHGKPLASADKNGIICTWT
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaggaggagattgcgagggaagcaataaaacacgctctgaaggctcttcggcgg
cggcatttggcggaagaaggtgctcatgctccagctttcatcgctctttcgaagccaatt
cttcatcagggctcagaatggaaggagaaagcggagaatctggaaatggaacttcagcag
tgttacaaagcccaatctcggctgtccgagcaactcgtggtggaagtagcggagtccaga
acttcaaaagcttcacttcaagagaaagaggcagcagtggctaatcttcagaaggaatta
tctgaacaaagggatgaatgctctcaattagcggctgacttggaagagaaggttaaagct
ttggaattggttgtgagtgagaacaaggaaataagagcgcagctagaagaaatgtctatt
cgagctaagaacgctgaggccgaaaataaggtgttaattgaccgctggatgttggagaag
atgaaggatgcagaacgccttaacgaggcaaatgcactctatgaagatatgattgagcgg
ctgagggccagcggtttggagaaacttgctaggcagcaagtagatggtgttgtccgccaa
agtgaagaaggtgctgagtactttttggagtcaaccattccctccacatgcaagaatagg
atgcctgcccatgatggtggctgcgcttccatattatttgagtacaattcagggaaattg
attactggtggacaggatgggtccatcaaaatgtgggatacaaatactgggtcactaact
cgtacactctatggttgcattggttctgttctggatctcacgattactcatgataataga
tctatcattgcagcaagcagctctaacaaattgtatgcctgggatgttaactcggggagg
gttcgacatactctcactggccacatggataaagtgtgtgcagtagatgtcagcaaattc
tcaagccgccatgttgtgagtgcagcttatgatcgtaccataaaagtttgggatatgcag
aaaggttactgcaccaacacaatcatgttcccaaaaaactgcaatgctctgtcatttagc
atggatggacagaccatatgttctggccatgttgatggaaatcttcgtttgtgggatatt
gagaaaggaaaactcctcagtgaagtagctgcacactcaaatgctgttacatccatatct
ttgtcccgaaatggcaatgttatactgaccagtgggagagacaatgtccataatttgttt
gacatgcggtctctagaagtctgtggaacattaagagccacaggaaacagagtagcgtcg
aattggagtagatcctgtatcagtccagatgacaattacgttgctgctggatctgctgac
ggttgtgtgtatatttggtcaatatcgaaagctgacattgtgagcactatgaaggagcac
actgcatcggtcctgtgttgttcatggagcgggcatggaaaacctctggcttctgcggac
aagaacggaatcatctgtacttggacgtga
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integrated database retrieval system
