Malus sylvestris (European crab apple): 126599745
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Entry
126599745 CDS
T09027
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B-like
KO
K07466
replication factor A1
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03030
DNA replication
msyl03420
Nucleotide excision repair
msyl03430
Mismatch repair
msyl03440
Homologous recombination
msyl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
126599745
03420 Nucleotide excision repair
126599745
03430 Mismatch repair
126599745
03440 Homologous recombination
126599745
03460 Fanconi anemia pathway
126599745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msyl03000
]
126599745
03032 DNA replication proteins [BR:
msyl03032
]
126599745
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126599745
Transcription factors [BR:
msyl03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
126599745
DNA replication proteins [BR:
msyl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
126599745
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
126599745
MMR (mismatch excision repair)
126599745
DSBR (double strand breaks repair)
HR (homologous recombination)
126599745
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
BRC-2_C
DUF8448
Motif
Other DBs
NCBI-GeneID:
126599745
NCBI-ProteinID:
XP_050122124
LinkDB
All DBs
Position
14:27552931..27556273
Genome browser
AA seq
604 aa
AA seq
DB search
MAKLMPTPDAISTVLANKSPDESVELPEIVVQVSDLTPRGKSYMFTATDGNAKLKGMLSS
RLGPQVTSGEIQNLGLIRVLGYSVNFNSNLSENYLLVTKCDVVSAALEAEVKNEVKKEDV
GIILKPKQEMVSKSAAQIVNEQAGNMAPSARMAMTRRVHPLVSLNPYQGNWTIKVRVTNK
GTMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAAKKFFEKFELGKVYYISKGSLRVA
NKQFKTVQNDYEMTLNEYSEVEEASNEAAFVPETKFNFVPVDMLGPHVNGKELVDVIGVV
QNVSPTMSIRRKIDNESIPKRDITIADDTKKTVVVALWGELATSVGQQLLDIADQSPIVA
IKSLKVGDFQGVSLSTLSKSTILVNPESPEAKKLRSWYDSEGKGASLASVGSGMSPSAKS
GGRSMYSDRVTLSHISEDPSLGEDKPVFFSVKAFISSIRPDQAMWYRACKTCNKKVTEAI
GSGYWCEGCQKNDEECSLRYISVARVTDVSGETYLSLFNDEAERVIGCSADELDKLKSQD
GDENEFQQKLKEATWVPHLFRVSVTLNEYNNEKRKRITARAVAPVDFAAESRFLLEEISK
MKAS
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagttaatgccgaccccagatgcgatttcgaccgtcttggcgaacaagtcgccg
gacgagtcggttgagctgccggagatagtggtccaggtctccgatctcacccctagggga
aaatcttacatgtttactgctactgatggaaatgcgaagctaaaggggatgctttcctcg
cggctgggtccccaggtcacatctggggagattcagaatctgggtctcattcgcgttctc
ggttattctgttaatttcaattcaaacttatccgaaaattatctgcttgtaacaaaatgt
gatgtggtttcggctgcacttgaggcggaggtgaaaaatgaggtgaaaaaggaagatgtt
gggattattttgaagcccaagcaagaaatggtttcgaaatctgctgctcaaattgtgaat
gagcaggctgggaatatggctccgtctgcgagaatggctatgacacgaagggttcacccg
cttgtttccttgaacccttaccaaggaaattggaccataaaggttcgtgttacaaacaag
ggtacgatgcgtacatacaagaatgctagaggtgaaggttgcgtcttcaatgtggagtta
acagatgaagatggaacacaaattcaagcaacaatgtttaatgaagctgcaaagaagttc
tttgaaaagtttgagttaggaaaggtttattacatttcaaaggggtctctgagggttgct
aacaagcagtttaagacagtgcaaaatgattatgaaatgacattaaatgagtattctgag
gtggaagaagctagcaatgaagcggcctttgttcccgaaacaaaattcaattttgttcca
gttgatatgttaggtccccatgttaatggaaaggagcttgtggatgttattggagttgtt
caaaatgtgtctcctacaatgagcattagaaggaagatcgacaatgagagtattccaaag
cgtgatatcaccattgctgatgatacgaagaagactgttgtggttgctttgtggggtgag
cttgcaactagtgtaggccagcaattgcttgacattgctgatcaatctcccatagtcgct
atcaagtccctcaaagttggagacttccaaggtgtatcattgtcaacactgagcaagagc
acaatattggtaaatccagaatcacctgaggcaaagaagttgcggtcctggtatgattct
gaaggtaaaggtgcttcattggcctctgttggctctggtatgagtccatcagccaagagt
ggaggaaggtccatgtactctgacagagtcaccctgtctcatatatctgaggacccatcc
ttgggtgaggataagcctgtgtttttcagtgttaaagcgttcataagttcgatcaggcct
gatcaggcaatgtggtaccgtgcttgcaaaacttgcaacaagaaggtgactgaagctatt
ggttctggatactggtgtgaagggtgccagaaaaatgatgaagaatgcagtttaaggtat
atatcagttgcaagagttactgatgtaagtggggaaacatatctttctctattcaacgac
gaagctgagagggtcatcgggtgctctgcagatgaactggacaaattgaaatcacaggac
ggagacgagaatgaattccaacaaaaactgaaagaagcaacttgggttcctcatcttttt
agggtcagtgttactctgaatgagtacaataacgagaagcggaagaggataactgccagg
gcagtcgctccagttgattttgctgctgaatcgaggtttttgcttgaagagatatcgaag
atgaaggcctcataa
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