Malus sylvestris (European crab apple): 126599799
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Entry
126599799 CDS
T09027
Name
(RefSeq) NF-X1-type zinc finger protein NFXL1-like isoform X1
KO
K12236
transcriptional repressor NF-X1
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msyl03000
]
126599799
04121 Ubiquitin system [BR:
msyl04121
]
126599799
Transcription factors [BR:
msyl03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
126599799
Ubiquitin system [BR:
msyl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
NFX1 proteins
126599799
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_NFXL1
zf-NF-X1
R3H
NCBP3
RNA_bind
Motif
Other DBs
NCBI-GeneID:
126599799
NCBI-ProteinID:
XP_050122203
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Position
14:29563873..29568439
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AA seq
1154 aa
AA seq
DB search
MSSHVRNDRRDRSRFPAQPTQPARREWVPRGSNPAIATAAVNPPPQVNPNNLNGNVSQPN
PRFNPNNQNGNVTQPNLRFNPNNLNGNVSQPTPRFNLDNPNSNVSQPNHSSVPSEIRPHR
GGNNGVRGQGRPVNHRRERGRNDNQEEKGLKDSNLPQLVQEIQDKLTKGTVECMICYDMV
RRSAPVWSCSSCYSIFHLACIKKWARAPTSIDMSAGKNQGFNWRCPGCQSVQLTSSKEIR
YDCFCGKRTDPPSDLYLTPHSCGEPCGKQLEREVPGKGVSKDDLCPHVCVLQCHPGPCPP
CKAFAPPRLCPCGKKMITTRCSDRTSVLTCGQHCNKLLDCWRHRCERTCHVGPCDPCQVL
VDASCFCRKKVEVVLCGDMTVKGEVKAEDGVFSCSSTCGKMLSCGNHSCSEVCHPGPCGD
CNLMPSKIKTCHCGKTSLQEERQSCLDPIPTCSQLCGKSLPCGMHQCQEVCHTGDCPPCL
VEVTQKCRCGSTSRAVECFKTTMENEKFTCDKPCGQKKNCGRHRCSERCCPLSNSNNALS
GDWDPHFCSMPCGKKLRCGQHSCESLCHSGHCPPCLDTIFTDLTCACGRTSIPPPLPCGT
PPPSCQLPCSLPQPCGHTSSHSCHFGDCPPCSVPVAKECIGGHVVLRNIPCGSRDIKCNK
LCGKTRQCGMHACGRTCHPPPCDTSCLAEQGSKTSCGQICGAPRRDCRHTCTSLCHPYAS
CPDSRCDYPVTITCSCGRMTATVPCDSGGNNASFKADTVYEASVIQRLPAPLQPIESTGK
KIPLGQRKLMCDDECAKMERKRVLADAFDIAPPNLDALHFGESSAVSELLSDLLRRDPKW
VLSVEERCKYLVLGKSRGATSGLKVHVFCPMLKEKRDVVRMIAERWKLAVQAAGWEPKRF
IVVHVTPKSKAPARILGVKGTTTVGAPQPPAYDYLVDMDPRLVVSFPDLPRDADISALVL
RFGGECELVWLNDKNALAVFNDPARAATAMRRLDNGALYHGAVVVHSNGSASMAASGSNA
WGGLGTAKEGGASAVLRGNPWKKAVTRESGWREDSWGEEEWSGSSTDAQANVWNKEVPIA
ASVNRWSVLDSDTALGSSASSPRVEDSRKQPLGPSNSGLESKASGSSSSSTLAGQPVGVI
ADTPEVDDWEKAYE
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgagttctcatgtccgaaatgatcgaagggataggtccaggtttcctgctcagcctact
cagcctgctcgtcgagagtgggtgccgagaggatccaaccctgccattgccactgctgcc
gtgaacccgcctccacaagtcaatccaaacaacctgaatggcaatgtcagccagcctaat
ccaagattcaatccaaacaaccagaatggcaatgtcacccagcctaatctaagattcaat
ccaaacaacctgaatggcaatgtcagccagcctactccaagattcaacctggacaacccg
aatagcaatgtcagccagcctaatcatagctctgttccatcagagattcggccgcataga
ggaggaaataatggcgttagaggacagggtcggccggtgaaccatagaagggagagggga
aggaatgacaatcaagaggagaagggattgaaggactcaaatttgccccagcttgtgcaa
gaaattcaggataagctgacgaagggcactgtcgagtgtatgatttgttatgatatggtg
aggaggtctgcacctgtttggtcctgctcaagttgctactcaattttccatctggcttgc
atcaagaaatgggctcgagctcccacttctattgacatgtctgcggggaagaatcagggg
tttaattggcggtgtcctggatgtcaatctgtacagctcacttcgtcaaaggagattcgg
tatgattgcttttgtggcaagaggacagacccaccttcagatttgtatttgacaccacat
tcatgtggcgagccttgcgggaagcaactcgagagggaggtaccgggtaagggtgtgagt
aaggacgatctttgccctcacgtttgtgtcttgcagtgccacccaggtccatgccctcct
tgtaaagcatttgcccctccacgtttatgcccatgtggaaagaaaatgatcacaacaaga
tgttccgaccggacatctgttctgacttgtggtcagcattgtaataagcttcttgattgc
tggcgtcaccgctgtgagcggacttgccatgtgggtccttgtgatccttgtcaggttctt
gttgatgcgtcctgcttttgccggaaaaaggtggaggttgttctctgtggagacatgact
gtgaagggagaggtgaaggcagaagatggtgttttttcatgcagttccacgtgtggaaaa
atgcttagctgcggtaatcattcctgcagcgaagtttgccatccagggccatgcggagat
tgtaatttaatgccaagtaagattaagacatgccactgtgggaaaacaagcttgcaagag
gaacgacagagttgtttggatccgattccaacctgttcacaattatgtggcaagtctctc
ccttgtgggatgcaccagtgtcaagaggtgtgccatactggggattgcccaccttgtttg
gttgaagtgacccaaaaatgtcgttgtgggtcaacttctcgggcagtggaatgctttaaa
accacaatggagaatgagaaatttacttgcgacaagccttgtgggcagaagaagaattgt
ggaagacatcggtgcagtgagaggtgctgtcccctttctaattcaaataatgctctctca
ggggattgggatcctcacttttgctctatgccctgtgggaagaagttaaggtgtggtcag
cattcttgtgaatcgctttgtcacagtggccactgccctccctgccttgatacaatcttc
acggacctgacctgtgcctgtgggaggacttcaatccctcctccactaccatgcggtacc
cctcccccgtcatgtcagctgccgtgttcactccctcagccttgtgggcatacatcttct
cacagctgccactttggagactgtccaccatgttcggtgcctgtggcaaaggagtgcatt
ggtgggcatgtggtcctcaggaacattccttgtgggtcgagggacatcaagtgtaacaaa
ctctgtgggaagacaaggcagtgtggtatgcatgcttgtggcaggacttgtcacccacct
ccctgtgatacatcttgtttggcagaacaaggttcaaaaacttcttgtggacagatatgt
ggtgctcctaggagagattgcaggcatacatgtacttcactttgtcacccttatgcttct
tgtcctgatagcagatgtgattatcctgtcacaatcacttgttcttgtggccggatgaca
gcaactgttccttgtgattctggtggcaacaatgctagtttcaaggctgatactgtgtac
gaagcttctgttattcaaaggttgccagcaccacttcaaccaattgaatcaaccggcaag
aagatcccgcttggacagaggaagcttatgtgtgatgatgaatgtgctaagatggagcgg
aaacgggttcttgcagatgcttttgatatagctcctccaaacttggatgcactccatttt
ggtgagagttctgctgtttctgagttgctttcggaccttcttagacgtgatcccaagtgg
gtattatcagtggaggagagatgcaagtacttagtgctcggcaagagcagaggtgctaca
agtggtctcaaggttcatgttttctgtccaatgctaaaggagaagagggatgtagttcgg
atgatcgctgaaagatggaagcttgcagttcaagccgctggttgggagcccaagcgattt
attgtggttcatgttacaccaaaatcaaaagcccccgctcggatacttggggttaagggt
acaacaacagttggtgcaccccagcctccagcttatgattatttagtagacatggatccc
aggcttgtagtttcattcccagatcttcctagagatgcagatataagtgcacttgtatta
aggtttggtggggagtgtgagttagtatggttgaacgataagaatgcattagctgtattc
aacgatcctgctcgagcagcaactgcaatgaggaggttggataatggcgcactatatcat
ggcgctgtagttgtccactcaaatgggagtgcatctatggcggcatcgggttctaacgct
tggggtggactggggacagctaaggaaggtggagcgtctgcagtgctgaggggtaatccg
tggaagaaggctgttacgcgagagtctggttggagggaagactcatggggtgaggaagag
tggtcaggcagttctacagatgcgcaggcaaacgtgtggaataaagaagtaccaattgct
gcctcagtaaatcgatggagtgtactagacagtgacacggcattgggctcatccgcttca
tctcccagggttgaggactctagaaaacagcctttgggtccatcaaattcgggtttggag
tcgaaagcaagcggttcgagttcgagttccactttggctgggcagccagttggagttatt
gcagatacacctgaagttgatgactgggagaaggcttatgaatga
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