Malus sylvestris (European crab apple): 126600093
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Entry
126600093 CDS
T09027
Name
(RefSeq) probable polyribonucleotide nucleotidyltransferase 1, chloroplastic isoform X1
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126600093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126600093
03016 Transfer RNA biogenesis [BR:
msyl03016
]
126600093
Enzymes [BR:
msyl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
126600093
Messenger RNA biogenesis [BR:
msyl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
126600093
Transfer RNA biogenesis [BR:
msyl03016
]
Prokaryotic type
tRNA degradation factors
126600093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
126600093
NCBI-ProteinID:
XP_050122581
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Position
14:complement(772254..792125)
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AA seq
943 aa
AA seq
DB search
MLANPDSGRLHCPNPSQFLNPNRPKCFRFPNCPRSPCFPSKSKFCNLSLLLPRQTSKKGL
GIRALSDPGGVSTSGGPLGYPQPYSVKIPVGDRHILVETGHIGRQASASVTVTDGETIIY
TSVCLADTPSEPSDFFPLSVHYQERFSAAGRTSGGFFKREGRAKDHEVLICRLIDRPLRP
TMLNGFYHETQILSWVLSYDGLHSPDSLAVTAAGIAVALSEVPNSKTVAGVRIGLVGDKF
IVNPTIKEMEDSELDLLVAGTDNAILMIEGYCDFLTEEKLLQAVEVGQDAIRAICNEVEA
LVKKCGKPKMLDAIKLPPPELYNHVEEIAGDELVRALQIKDKIPRRKALLSLEGEVLTIL
TEKGYISKDAALIGSETIPDIFEDEEEDEEVVVDGEVDEGDVHIKPSSRKSTPLFFSEVD
VKLVFKEVTSKFLRRRIVEGGRRSDGRTPYEIRPINSKCGLLPRAHGSALFTRGETQSLA
VVTLGDKQMAQRVDNLVDVDEWKRFYLQYTFPPSCVGEVGRNGAPSRREIGHGMLAERAL
EPILPSEDDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKSSIVGIAMGMVLE
TEEFGGNGSPLILSDITGSEDASGDMDFKVAGNEDGVTAFQMDIKVSGITLPVMREALLQ
AKDGRKHIIGKNASSRTHSQTCPNTSTEMLKCSSPPSRSLSKYAPLIHIMKVNPEKVSLI
IGSGGKKVKSIIEESGVDAIDTQEDGIVRITGRDLSSIEKTKAIITNLTMVPSVGDIFRN
CEIKSIVPYGVFVEIAPGREGLCHISELSSEWLAKAEDAVKVGQHIDVKLIEVNEKGQLR
LSRKALLPDTDAENASSKQPTGDSSDVASQETSDKGSTKKIISTPKRDLAGELPQKKFIR
RLVSAAKDRPNINKDKTKKSSKVVSSVSSKDENTLVNGEANIE
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgttggcaaatcctgacagtggcagactccactgccctaatccctcccaattcctgaac
ccaaacaggcccaaatgtttccgctttccaaactgccctcgttccccatgcttccccagc
aagtccaagttctgcaacttgtccctgcttctgcccaggcagaccagcaagaagggtctt
ggcatcagagctttgtccgatcccggcggtgtctcgacgagcggtggtcctctgggatac
cctcagccgtactctgtcaaaatccctgttggtgatagacatattttggttgagacaggt
catattgggagacaagccagtgcttctgttacagtgacagatggagaaaccattatttac
acatctgtttgtctggctgacactccaagtgagccttcagacttcttccctctttcagta
cattatcaggagcgcttttctgcagcaggtcgaactagtggaggcttcttcaaacgagaa
ggaagggcaaaagatcatgaggttctcatttgtagattgattgataggcctttgcgtcca
actatgttgaacggcttctaccatgaaactcagatactttcttgggttctgagttatgat
ggtttgcactctcctgattctttggcagtcacagcagctgggatagcagtggctctttca
gaagttccaaactcaaaaactgtagcaggagtgcgaattggtcttgttggtgacaaattt
atcgtgaatccaacaataaaggagatggaagactctgaattggacttgttggtcgctggc
acggataatgcaatattgatgatagagggctattgtgattttctcacagaggaaaagttg
ctgcaagcagtagaagttgggcaggatgccatacgagcaatttgcaatgaggtagaagct
ttggttaagaagtgtggaaagccaaaaatgcttgatgcaatcaaattacctccccctgag
ctatataatcatgttgaggaaattgccggtgatgagttggtaagagctctgcagattaag
gacaagattcctagaaggaaagctctcttgtctttggaaggagaagttttaactatacta
acagaaaagggatatattagtaaggatgcagctctcataggcagtgaaacaataccagat
atatttgaagatgaagaggaggatgaggaagtggttgtggatggtgaagtagatgaaggt
gatgttcatataaagcctagttcacgaaagtcaacccccttgttcttttctgaggtagat
gtgaagctggtattcaaagaagttacatccaaatttttacgaagacgcattgtggagggt
ggaagaagaagtgatggacgtaccccatatgagatacgtccaattaactcaaaatgtgga
ctgcttccaagggcacatggaagtgctcttttcacacgtggggaaacccagtcattggct
gttgttacacttggggataaacagatggcacagagggtagacaacctagttgatgttgac
gaatggaagagattctatctccagtacacatttcccccttcatgtgttggggaagttgga
cggaatggagcccctagtagaagagaaattggccatggaatgcttgctgagagagctctt
gaaccaattttgccttccgaagatgattttccttacactatacgtgttgagagtacaatt
actgaaagcaatggctcttcaagtatggcatctgtttgtgggggctgcttagctttgcag
gatgctggtgttccgatcaagtcctctatagttgggatagcaatgggtatggttctggaa
actgaggaatttgggggaaacggttctccactaattctgtctgacataactggatctgaa
gatgcatctggggatatggatttcaaggttgctggaaatgaagatggtgtaactgcattt
cagatggacataaaggtgagcgggattactttaccagttatgagagaggcactcctacag
gcaaaggatggccgtaagcatattattggtaaaaatgcttcctccagaacccactctcag
acatgccccaatacaagcacggaaatgctgaagtgctcatctcctccttcaagatcgctt
tctaagtacgcaccactgattcacataatgaaggtcaaccccgagaaagtaagcttaatc
attggtagtggtgggaagaaggtgaagagtattatagaagagtctggagtagacgcaatt
gacacacaagaagacgggatagtgagaattaccggcagggatttgtctagcatagaaaag
actaaagctattattactaacttgacaatggttccgtcagttggtgatatcttcaggaac
tgcgagatcaaatcaatagttccatatggagtatttgtggaaatagcacctgggcgagag
ggactttgccatattagcgagttgagttcagagtggctggcaaaggcagaagacgctgtt
aaagttggacagcatattgatgttaaacttattgaggtaaatgagaaggggcaacttcgc
cttagccgcaaagctctacttccagatacagatgcagagaatgccagttcaaagcagcct
acgggtgactccagtgatgtagcttcccaagaaacatctgacaagggttcaacgaagaaa
attattagcactccaaagagggacttagctggagagctcccacaaaagaagttcattcgg
agattagtcagtgctgccaaagacagaccaaatatcaacaaagataagacaaagaagagc
agtaaagtagtcagtagcgtctccagcaaggacgaaaatactttagtgaatggagaggct
aacattgaatag
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