Malus sylvestris (European crab apple): 126600488
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Entry
126600488 CDS
T09027
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126600488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126600488
03012 Translation factors [BR:
msyl03012
]
126600488
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126600488
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
126600488
Translation factors [BR:
msyl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
126600488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
Dicer_dimer
T2SSE
nSTAND3
NPHP3_N
AAA_16
AAA_30
ATPase
Motif
Other DBs
NCBI-GeneID:
126600488
NCBI-ProteinID:
XP_050123016
LinkDB
All DBs
Position
14:29039209..29047240
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AA seq
1234 aa
AA seq
DB search
MPYSALYQGYIFRTTTMSLKPSTTSTTTVLVSLRGTPHRRHHVALVRPSMLLGCSMRNSR
YHHTHCLAPPLNWNACYYLPRHVGDVACQASSRAAELDWKQRKQLRSSAVPFYQQNLSYG
RFAYQDASASEESDAELVSSQRQMGGSTLDNIDEWRWKLTMLLRNKDEQELVSRERKDRR
DFDHLSALASRMGLYSRQYSRVVVFSKIPQPNYRPDLDDKRPQREVVLPFGLHREVDAHL
KAYLSQKPMSQGNVSDFSLSRSNSSRSITNDGGHYEQQEPLIQNTDAMEKILQRKSLQLR
NRQRHWQESPEGQKMLELRKSLPAYKKKDALLKAVSENQVLVVSGETGCGKTTQLPQYIL
ESEIEADRGASCSIICTQPRRISAMAVSERVAAERGENLGESVGYKVRLEGMKGRDTRLL
FCTTGILLRRLLVDRKLRGVTHVVVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSAT
LNAELFSSYFGGAPMIHIPGFTYPVRAHFLENILEMTGYQLNQYNQIDDYGHEKSWKMQK
QAQGFKKRKSQIASSVEDVLEAADFREYSPRTQESLSCWNPDSIGFNLIGNLLLHIVKKE
RPGAILVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMPSSEQKLIFDKPEDGVR
KIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAASRQRRGRAGR
VQPGECYHLYPRCVYNAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSKALQPPEPL
SVQNAVEYLKIIGALDDSEDLTVLGRHLSVLPVEPKLGKMLILGCIFNCLDPVMTVVAGL
SMRDPFLMPHDKKDLAESAKAQFSARENSDHLALVRAYDGWRSAERTQSGYEYCWRNFLS
VQTLKAIDSLRKQFFFLLKDAGLVDHNTENCNTWSHDEHLVRAVICAGLFPGICSVVNKE
KSIMLKTQEDGQVMLYSSSVNGNIPKIPYPWLVFNEKVKVNSVFLRDSTGISDSVLLLFG
GNISRGGVDGHLKMLGGYLEFFMNPALAETYLCLKRELDELIHNKLLNPKLDMQSHTSLL
SALRLLVSEDQCEGRFVFGRKVPVPSKKATQEKVPKLQGTMKKVAENNNYKNHLQTLLTR
AGHDAPTYKTKPSKNNQFRSTVIFNGLNFVGKPCNSKKEAEKDAAAEAVLWLRGENHSSS
TDIDHMSMLLKKSRKKSQKRTSFDSANGVKGCSS
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgccgtactccgccctctaccagggatatatattcaggaccaccaccatgtccctcaaa
ccctccaccacttccaccactaccgttctcgtctctctccgcgggaccccccaccgccgc
caccacgtagctttggtaaggccgtcgatgctgctgggatgctccatgaggaacagccgg
taccaccacacgcactgccttgctccgccgctgaattggaatgcgtgctattatctgccg
cgtcatgtgggggacgtcgcgtgccaggcttcgtctcgggcggcggagctggattggaag
cagaggaagcagctgaggagttcggcggtgccgttttaccagcagaatttgagctatggg
cggtttgcctaccaggacgcctccgcgagtgaggagtccgacgccgaattggtgtcgtct
cagcgccaaatgggtggttcgacccttgataacattgacgaatggagatggaagttaacc
atgcttcttcgcaacaaagatgagcaagaattggtgtccagggaaagaaaggatagacgc
gattttgatcatctttcagcactggcaagtaggatgggtttatatagccgtcagtattct
agagttgtagtatttagcaaaattcctcagccaaattacagacctgatctggacgataag
cggccacaaagagaggttgtcttaccttttggacttcatagagaagtagatgctcatctc
aaagcctacctatctcaaaagccaatgagccaaggaaatgtatcagatttttccttgtca
agatcaaacagtagtagaagcattactaatgatggaggacattatgagcagcaggagccc
ttgatacagaatactgatgccatggagaaaattcttcagcggaaaagcttgcaactgcgt
aataggcaacgacattggcaggaatctccagaaggtcaaaagatgcttgaacttcgtaaa
agtctgcctgcatacaagaagaaagatgcactgttaaaagctgtgtcagaaaatcaggtc
ttagttgtctcaggcgaaactggttgtggtaaaactacgcagcttcctcagtacatttta
gaatctgagattgaagctgatcgcggagcttcctgcagtattatttgtacccagcctaga
cggatatctgccatggctgtttctgaaagagttgctgcagaacgaggggagaatctgggg
gaatctgttggttacaaagttaggcttgaagggatgaaagggcgggacacccggcttctt
ttttgcaccacgggtatattattgaggagattacttgttgacagaaagttgagaggtgtt
acacatgtcgttgttgatgagattcatgaacgcggaatgaatgaagattttcttcttatt
gttctgaaagaacttctccctcgccggccagagttgaggttgattttgatgagtgccacg
ctaaatgctgagcttttctcctcctactttggtggtgctccaatgatccatattcccggg
tttacatacccagtccgagcacattttctggagaatattctagaaatgactgggtatcag
ttgaatcaatataatcagattgatgattatggtcatgaaaagtcgtggaaaatgcagaaa
caagctcaaggtttcaaaaagaggaagagccaaattgcttctagtgttgaggatgtactt
gaagctgctgactttagggagtacagtccaaggactcaggagtctttgtcctgttggaat
cctgactccattggttttaacctcattgggaatcttcttttacacatagtcaagaaagaa
cggcctggtgcaattttggtttttatgacgggttgggatgacataaattccttgaaggat
caactccaagctcatcccctattaggagatcctagcagggtcctactgctagcatgtcat
ggttccatgcctagctctgagcagaaattgatatttgataagccagaagatggtgttcgg
aaaatagttctagctacaaacatggctgagactagtatcactatcaatgatgtagttttt
gttgttgattgtggaaaggcgaaagagacatcatatgatgcactaaataacactccctgt
ttgcttccatcctggatttcaaaggctgcttctcggcaaaggagaggtagagctggtcgt
gttcaacctggtgagtgttaccatctctaccccagatgtgtatataatgcctttgctgat
tatcagttgcctgaacttttgaggactcccttgcaatctttatgtttacaaatcaaaagt
ctacaacttggaagtatttcagagttcctatctaaggccttgcagccacctgaacctctg
tcggttcaaaatgctgttgagtatttgaagatcattggggctttagatgatagtgaagat
ctgacagtgttaggacgtcacctgtcagtgcttcccgttgagcctaaacttggaaaaatg
ctcatattagggtgtattttcaactgtctggatccagtaatgactgttgtcgcaggcctc
agtatgagagatccattccttatgccgcatgacaagaaggatcttgcagagtcggcaaaa
gcacagttctctgctcgtgaaaacagcgatcatcttgctctcgtccgagcttatgatggt
tggagaagtgctgaaagaacacagtctggctatgagtactgctggagaaacttcctttct
gtgcaaactctgaaagccattgactctcttcggaagcagttcttctttttgctcaaggat
gcgggtctggttgaccataatacagaaaactgcaatacatggagccatgatgagcatctt
gtccgagcagttatctgtgctggattatttccgggaatatgctctgtcgtgaacaaagag
aagtcaattatgctgaaaacacaggaagatggacaagtgatgctatactcgagttctgtc
aatggaaacatacccaaaattccatatccatggcttgtcttcaacgaaaaggtgaaagtg
aattcagtttttctccgggattcaactggtatatctgattctgtgctccttttgttcgga
ggcaacatttccaggggtggcgtggatgggcacttgaagatgctgggaggatacttagag
tttttcatgaatcccgcattagcagaaacatatctttgcttaaagagggagcttgatgaa
ctgatacataataagctcctgaatcccaaattggatatgcaatcacacacgagcctccta
tcagcgctaagattactggtctcagaggatcaatgtgagggtagatttgtatttggtcgc
aaggtgccagtgccctcaaagaaggcaacacaagagaaggtaccaaagttacagggtacc
atgaagaaagttgcggagaacaataattacaaaaatcacctccaaacattgctcaccaga
gccgggcatgatgcacccacctacaaaacaaaaccatcgaaaaacaaccagttccgttcc
acagtgatcttcaatgggttgaactttgtaggcaaaccttgcaatagtaagaaagaagca
gagaaggacgcagctgctgaagctgtactctggttaaggggagagaatcattcatcgtcc
acagatattgaccatatgtcgatgctgcttaagaaaagtagaaagaaaagccagaaaagg
acctcatttgatagtgccaatggggttaagggttgctcgtcatag
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