Malus sylvestris (European crab apple): 126601140
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Entry
126601140 CDS
T09027
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126601140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126601140
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
126601140
mRNA degradation factors
5'-3' decay
Lsm complex
126601140
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
126601140
NCBI-ProteinID:
XP_050123757
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All DBs
Position
15:complement(17700106..17702600)
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AA seq
128 aa
AA seq
DB search
MSWAGAEDTFLSTSLATYLDKKLLVLLRDGRKLLGLLRSFDQFANVVLEGACERVIVGDL
YCDIPLGLYVIRGENVVLIGELELDKEELPPHMTLVPEAEIKRAQKAERDATDLKGSMRK
RMEFLDFD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgggctggagcagaagatactttcctttccacttctcttgcaacctatctcgac
aaaaagcttcttgtattattgcgagatggacgaaagttgttgggattgctacggtctttt
gatcagtttgctaatgttgttcttgaaggcgcatgtgaacgagtaattgtgggtgacctt
tattgtgacatcccattaggtctgtatgttatccgtggggagaatgtcgtcttaattggg
gagctggaattggataaggaagagcttcccccgcatatgactttggtaccagaagctgag
ataaaaagggctcagaaagcagagagggatgcaacagatttaaaaggctccatgagaaaa
agaatggagtttctcgattttgattaa
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