KEGG   Malus sylvestris (European crab apple): 126601351
Entry
126601351         CDS       T09027                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2-like
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
msyl  Malus sylvestris (European crab apple)
Pathway
msyl03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:msyl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    126601351
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:msyl03021]
    126601351
Enzymes [BR:msyl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     126601351
Transcription machinery [BR:msyl03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     126601351
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5 CFAP77
Other DBs
NCBI-GeneID: 126601351
NCBI-ProteinID: XP_050124005
LinkDB
Position
15:2643032..2649969
AA seq 1203 aa
MGASSDAKGDIGMSSKGESFTNGVDMDIDDSDYDDEHDYSTSLNDLGEGLLKNFCKEAAT
SFFNEYGLISHQINSYNDFIKNGIQRVFSSFGEIVVEPGYDPSKKGDNEWRYALVKFGTV
TLGRPSFWGGSDNDKEYNMLPRHARLQNMTYCSKMKVNITVEVYNQRLVSSDKFKTGKER
FLDKEILSTDTRDITVGSVPVMVKSDLCWMKDVEKGDCDFDHGGYFIIKGAEKTFIAQEQ
SCLKKLLITNNQGLTVAYRSEVKRHRLIIRLVGISKLENIEGVEKVLTVYFMSTEIPVWV
WFFALGVSSDREVIDLIDYGSEDASILNILFASIRDADKATEKVDGGFRRGKNALKYVDD
VIKKTAFPPGESIEECISLYLFPNLRGLKQKARFLGYMVKSLLQASAGRRKCDNRDDFRN
KRLDLAGELLERELKAHIGHARRRMAKALQRDLYGDRVVRPIEHYLDASIVTNGISRAFS
TGAWCHPFKRMERMSGVVANVGRANPLQTMIDMRKTRQQVQYTGKVGDARYPHPSHWGKV
CFLSTPDGENCGLVKNLATTGLVSTNVLESLLPELSLCGMEKLVDDTSTSLQGKLKVFLN
GDWLGVCEDSLSFVSELRRMRRRKKLPPQVEIKRDEKQGEVRVYSDAGRILRPLLVVENL
NKIKAFKGGKYPFQYFLDKGIIELIGSEEEEDCSTAWGIRYLFMEEKGKSAVKYTHCELD
MSFLLGLSCSIIPFANHDHARRVLYQAQKHSAQAIGFSTTNPNLRVDTLSHQLHYPQRPL
FQTMTSDCLGKPGHQLGQNRVLPKPELHNGQNAIVAVNVHLGFNQEDSIVMNRASLERGM
FRSEHIRSYKAEVDNKDSLEKRRKPDDCVNFGKMQSKFGRVDNLDEDGFPYVGANLQSGD
IIIGRCSESGADHSIKLKHTERGMVQKVVLSSNDDGKNFAVVSMRQVRSPCLGDKFSSMH
GQKGVLGFLESQENFPFTVQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIASGGQKRYA
TPFSTLSVDDIAKQLHRAGFSRCGKERVYSGGTGQMVRSLIFMGPTFYQRLIHMSEDKVK
FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQVYICQ
KCEHVANVIQRSVEGGRKIRGPYCRNCNSADDLVKANVPYGAKLLCQELFSMGISLKFET
RFS
NT seq 3612 nt   +upstreamnt  +downstreamnt
atgggggcgtcgtcggatgccaagggagatatcggtatgagcagcaagggagaaagtttt
acaaatggtgttgacatggacatcgacgatagtgactatgatgatgaacacgattactcg
actagccttaacgacctgggggaaggacttctgaagaatttctgtaaggaagcagcaaca
tcattcttcaacgagtatggcctcattagtcatcaaatcaactcatacaacgacttcata
aaaaatggcattcaaagggtcttcagttcttttggtgagattgtagttgagcctggctat
gacccgtcgaagaagggagataacgaatggcgctatgctttagtgaagtttgggactgtt
acccttggcaggccaagtttttggggtggttctgacaatgataaggagtataatatgttg
cctaggcatgctcgacttcagaacatgacgtactgctctaagatgaaagtgaatatcacc
gtcgaggtatataatcaacgacttgtcagcagcgataagtttaagactggaaaagaacga
tttcttgacaaggaaattttaagtacagataccagagacattacagttggtagtgtccct
gtgatggtgaagtctgatttatgctggatgaaggacgttgagaaaggtgactgtgatttt
gatcatggaggctattttataatcaagggtgcagagaagacatttattgcacaagaacag
agttgtctgaagaaacttctcatcacaaataatcagggtctgacagtagcatataggtca
gaggtgaagaggcataggttaataattagactagtcggaatttctaaacttgaaaacatt
gaaggagtagagaaagtccttactgtttacttcatgtcgacagaaatccctgtgtgggtg
tggttttttgcgcttggcgtttcatcagatagagaagttattgatctgattgattatggt
agtgaagatgccagcattttgaacatactttttgcctcaattcgtgatgccgataaagct
actgaaaaagtggatgggggcttccgtagggggaagaatgccctcaaatatgtggatgat
gtgataaagaaaactgcatttccacctggggaaagcatcgaagagtgcattagcttgtat
ctttttcccaatctcagaggcctaaagcaaaaggctcgctttcttgggtatatggtgaaa
tccctgttacaagcctccgctggtcgcaggaaatgcgacaatagggatgactttaggaac
aagaggttggacttggcaggtgagcttctcgaacgagagctaaaggcgcatattggacat
gcaaggcggcgcatggcaaaggccttgcagagagacctttatggtgatcgggttgtgcgg
ccaattgaacactacctagatgcctccatagttactaatggcatctcgagagcattctca
actggagcatggtgtcatcccttcaagagaatggagaggatgtctggtgtagtggctaat
gttgggcgagcgaatccgctgcagacaatgattgatatgcggaagacaaggcagcaggtt
caatatacagggaaggttggagatgcaagatacccgcatccttctcactggggaaaagtt
tgctttctctcaaccccagatggtgagaattgtgggcttgtaaaaaatttggctaccact
ggattagtaagtacaaatgtattggaatctctactacctgaattgtctctctgtggaatg
gagaaattggtggatgatacttctacctcactgcaagggaagctcaaagtttttctgaat
ggggactggcttggagtttgtgaagattccctctcatttgtctcggaactcaggaggatg
cgacgtaggaaaaagttgccacctcaggtggaaatcaaaagagatgaaaagcaaggagaa
gtacgagtatattctgatgctggaaggatcctacgccctctcttggtagttgagaatttg
aacaagataaaagcatttaaagggggaaagtatccattccagtattttcttgacaaagga
ataatcgagcttattggatctgaagaagaggaagactgtagtactgcatggggcattaga
tatctgtttatggaagaaaagggaaaatcagctgtaaagtacacacactgtgagctggac
atgtcattcctgttgggtttaagctgtagcattatcccatttgcgaatcatgaccatgca
aggagggtcctctaccaggcccagaagcactcagcgcaggctattgggttttctaccaca
aatcctaaccttcgagtggatacgctgtctcaccaactgcactacccccagaggccactt
tttcagacaatgacgtcggactgccttggcaaaccaggacaccaactgggtcaaaacaga
gttttgccaaagcccgaattgcacaatggtcagaatgcgattgtggcagtcaatgttcac
ttgggattcaaccaagaagatagcatagtaatgaaccgggcatcattggaacgtggtatg
ttccgatctgagcatatcagaagttacaaggctgaggttgacaacaaggactccttggaa
aaaaggcggaagcctgatgattgtgtcaattttggcaagatgcagagcaagtttggccgg
gttgacaatctcgatgaggacggctttccatacgtcggtgcaaacttgcagagtggtgat
atcatcatcgggaggtgcagtgaatcaggagctgatcatagcatcaaactgaagcacacc
gaaaggggaatggttcagaaggttgtgctttcttctaatgatgacggaaagaactttgct
gttgtttctatgagacaggttcgctcaccgtgtcttggagacaagttctcgagcatgcat
gggcaaaagggggttctaggttttctggagtcccaagagaacttccctttcacggtacag
gggatagttccagatattgttataaatccccatgcatttccgtcaagacaaactcctggt
caactcttagaagctgctttagggaagggaatcgcctctggtggtcagaagagatatgcc
accccgttctctactctctctgtcgatgacatcgcaaaacaactgcatagggctggattt
tcaagatgcggaaaagagagagtatacagtggtggcaccggtcagatggttcgttccctc
atattcatgggccccaccttttatcagcgcctgattcacatgtctgaagacaaagtaaag
ttccggaacactgggccagtccaccctctcacccgtcagccagtggcagatcggaagcga
tttggagggatcaagtttggagaaatggaacgtgactgcctaatagcacacggagcttca
gcaaacttacatgagcgcctcttcactctcagtgactcctcccaggtgtacatctgccag
aaatgcgaacacgtagctaatgtgatccaacggtcagtcgaaggaggacgtaagatcagg
ggtccgtactgccggaattgcaattctgcagatgatcttgtgaaggcaaacgtcccgtat
ggagcgaagttactgtgccaggagctgttcagcatggggatcagtttgaaattcgagacc
cggttttcttaa

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