Malus sylvestris (European crab apple): 126601784
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Entry
126601784 CDS
T09027
Name
(RefSeq) uncharacterized protein LOC126601784 isoform X1
KO
K06100
symplekin
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126601784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msyl03021
]
126601784
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126601784
Transcription machinery [BR:
msyl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
126601784
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
126601784
U7-dependent histone pre-mRNA processing factors
126601784
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
MtrB
Motif
Other DBs
NCBI-GeneID:
126601784
NCBI-ProteinID:
XP_050124497
LinkDB
All DBs
Position
15:48409539..48437229
Genome browser
AA seq
1333 aa
AA seq
DB search
MAGAASNNDQALSLLATVNNHGDLAVKLSSLKQAKDLLLSLEPSVAADVFPYLVELQSSP
ESLVRLSLLEVIEEVGMKAMEESSVLMSVLLAFLKDSDSIIARQSIVSGTNFFVTVLEEM
TLQFHRRGKVEIWLEELWSWMSKFKDAIFAIAVEPGSVGTRLLALKFLETYILLFTSEGN
DSGKPVIEDTASSRRDFNISWLVGGHPILDPYMLMSEANRTLDILLNLLRSSSSLPGSVT
IAVVNSLAAIARKRPIHYNTILSALLDFDPNFEIVKGRHVASIQYSLRTAFLGFLRCTNP
ALVESRDRLLRALRAMNAGDAADQVIRQVEKMLRNAERASRDARLAKDDQQPSQLPVPVD
VLKKRPPPLDVEESSNNHEMPSKRIRYGPDSYSTLPFQMNSSGWDATSVNGVSSDLPMLD
GESTPVEQMIAVIGALIAEGERGAQSLEILISNIHPDLLADIVITNMRHLPKMPPPLTRL
GNLPVPQQIGSPTSSVQSPVPTVQMPFFAATVTSLSVSDMSNVNSLPTDSKRDPRRDPRR
LDPRYVAVSSGLASTPTAEDSTTMHSDFDGSNSLNKLDPLPNVTTVETPLATPMIKMEID
ERILDSQLVTGTGPLTPKGEVLHRPVEIDADPEVNLSSDLTDSSVQTVDEDLVAVKLSDS
EVKDQVEDLDTSSFLESDQHSPVLSNTSASEDTYEDLPQVPIYVELTQEQERNVRKLAIE
RIIESYKYLHGTDYSQMRLALLARLVAQIDADDEIVVMLHKHIIVDYQQKKGHELVLHVL
YHLHALRMSDSVENRTFATAVYEKFLLKVAKSLLESFPASDKSFSRLLGEVPILPDSTLK
LLDDLCYSDVIDQHGKDVRDVERVTQGLGAVWSLILGRPHYRQSFLDITLKCSVHPQDEI
RAKSIRLVANKLYKLSYLSEMIEKFATNMLMSAVEQSPSGIEHSQSESTGQKVEGMVGSQ
ETSIGDFETLESGNTENDSTRKYQPVSAMSFPEVQRLISLFFALCTKKPSLIELVFNTYG
HAPKAVKQAFHRHIPVLIRALGSSYSELLKIISDPPQGSENLLMLVLQILTQETSPSADL
IATVKHLYETKLKDVTILIPMLSALSKNEVLPIFPRLVALPLEKFQTALAHILQGSAHTG
PALTPAEVLVSIHGIVPEKDGLPLKKITDACSACFEQRTVFTQQVLAKALNQMVDQTPLP
LLFMRTVIQAIDAFPSLVDFVMEILSKLVSKQVWRMPKLWFGFLKCASQTQPHSFPVLLQ
LPPPQLEGALNKYANLRGPLATYASQPSVKASLPRPTLAVLGLANETHSQQPHLPSSFHP
ADTSSSVHGATPT
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atggccggagcagcttccaacaacgaccaggctctctctctcctcgccaccgtcaacaac
cacggcgatttggccgtcaagctttcgtctttgaagcaggccaaggatcttttgctgtcc
ctcgagccctctgtggctgccgacgtcttcccctacttggtcgagctccagtcctccccc
gaaagcctcgtccgcttgtctctcctcgaggtcattgaggaggttggaatgaaggcaatg
gaggaatcttctgtactaatgtctgtcttattggcatttttaaaagacagtgactctatt
attgcaaggcaatctatagttagtggaacaaatttctttgtcaccgtcttggaggagatg
acgttgcagtttcaccggcgtggtaaagttgagatatggcttgaagaactttggtcgtgg
atgtccaagtttaaggatgccattttcgctattgcagtagagcctggatctgtggggaca
aggttgcttgctttgaaatttttggaaacatatattttgcttttcacatctgaaggcaat
gattctggaaaacctgtcatagaagatacagcatcaagtagaagggattttaacatttcg
tggcttgttggtggacaccctattcttgacccgtacatgctaatgtcagaagcaaatagg
actcttgacattctattaaatttgttgaggtcatctagtagtctccctggttcggtgaca
attgccgttgtcaatagtcttgcagccatagcacggaagaggccaattcactataatacc
attctttctgcactgttagattttgatccaaactttgagatagtgaaaggacgccatgtg
gccagtatccagtattctttaagaactgcattcttgggattccttaggtgtactaacccg
gccttggtagagtcaagagatagactgctgagagctctacgagctatgaatgctggggat
gcggctgatcaagtaatccgtcaagttgaaaaaatgttaagaaatgctgagcgtgcttca
cgtgatgctcggttggccaaggatgatcaacaacctagccagttgcctgtcccagtggac
gtgttaaagaagagacctccacctctggatgttgaagagtcatccaataatcatgaaatg
ccgtccaagagaattcgttatggtcccgactcctattcgactttgccatttcaaatgaat
tcttctgggtgggacgccacttctgtcaacggagtatcctctgaccttcctatgttagat
ggtgaatcgactcctgtggagcaaatgattgctgtgattggtgctttgattgctgaagga
gaaagaggtgctcaatcccttgaaattcttatttcaaatatccatcctgatctattggct
gacatcgtcataactaacatgaggcatttgcctaagatgcccccacccttgacaaggctt
gggaacttgccggttccccagcagataggatctccaacatcttctgtgcagtctccagtt
cccactgttcaaatgcctttttttgctgcaactgtaaccagtttatcagtttctgatatg
tccaatgtgaatagtcttcccactgattccaagagagatccacggagggatccccgtcgc
ctggatccacggtatgtagcagtgtcttctggactggcatccacacccactgcggaagat
agtactactatgcattctgactttgatggctcaaattctttaaataagcttgatccgctg
cccaatgtgacgactgtcgagactcctttagcgactcccatgatcaaaatggaaatcgat
gaaaggattttggatagtcaattggttactggaactggcccactaactcctaagggggag
gttctgcatagacctgttgaaattgatgctgatccggaggtcaatttatcttcagatctc
acagattcttctgtgcaaacagttgatgaggaccttgttgcagtgaagctgtcagatagt
gaagtgaaagatcaggttgaggaccttgatacctcatcttttctagaatctgatcaacat
tctccggttctttcaaacacatctgcatcggaagatacttatgaggatttgcctcaggtt
cccatatatgttgagcttacccaagaacaggaaagaaatgtgagaaaattagcaattgag
cgaattattgagtcatacaagtatttgcatggcacagattacagtcagatgcgcctggcc
ttacttgctcggttggttgctcagattgatgcagatgatgaaattgttgtaatgctgcat
aagcatatcattgtggattaccaacagaaaaagggccatgagctagtactgcatgtcttg
taccatctgcatgctttgagaatgtctgattcagttgaaaaccgtacatttgctactgcc
gtatacgaaaagttcctcttgaaagtggctaagtctttgctggaatcctttcctgcctca
gacaagtcgtttagtagacttcttggtgaagttccaattttgcccgactccaccttgaaa
ctacttgatgatttatgctattctgatgttattgatcaacatgggaaagatgttcgtgac
gttgagcgcgtcactcagggccttggggctgtttggagtttaattttgggaaggccacat
tatcgacaaagctttttagatatcactttgaagtgttctgttcatccacaagatgagatc
cgagctaaatctatccggctggtggcaaacaaactctataagttgagttacttatcagaa
atgattgagaaatttgcgacaaatatgttgatgtcagctgttgaacaatctccttcgggt
atagagcattcacaatccgagtccacaggacaaaaagttgaaggaatggttggaagccaa
gaaacatcgattggtgattttgaaactttggagtctggaaatactgaaaatgattccacc
agaaagtatcaaccagtatcagccatgtcatttcctgaagttcaacgactcatttctttg
ttttttgctttatgtacaaagaaacctagtcttattgaacttgtatttaatacttatgga
catgccccaaaagctgtaaagcaggcatttcatcgccatattccagtccttataagggcc
ctagggtcatcttattctgaattgctaaaaattatctctgatccacctcaaggaagtgaa
aatcttttgatgctggtgctgcaaatattgactcaagagacatcgccttcagctgatctg
atagccactgttaaacatttgtatgaaacaaaattaaaggatgtcacaattcttattcca
atgctgtctgcactttctaaaaatgaggttttacctatattccctcggcttgtcgctctt
ccattggaaaagttccagacagcacttgctcacatactgcagggctcagctcatacaggc
ccagctttaacacccgcagaagtgttggtttccatccatggtattgtccctgagaaagat
ggactcccacttaagaagataacggatgcttgctcagcctgttttgagcaacgcacagtt
tttacacagcaggtcttggcaaaggccctgaatcagatggttgaccagactcctcttcct
cttctctttatgagaacagttattcaggcaatagatgcttttccttcactggttgatttt
gtaatggaaatactttccaaacttgtcagcaaacaggtgtggagaatgccaaaactgtgg
tttggattcttgaaatgtgcgtcacagacacagccgcattctttccctgtattgttacag
ttaccacccccgcaacttgaaggcgctctgaacaaatatgcgaacctcagaggtcccctt
gccacctatgctagccagcctagtgtaaaagcttcactccctagaccaacactagccgtc
cttggtctagcaaatgaaacgcattcgcagcaaccgcatttgccatcatcctttcaccct
gcagacacaagctcatcagtacatggagcaactccaacgtga
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