Malus sylvestris (European crab apple): 126601912
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Entry
126601912 CDS
T09027
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03440
Homologous recombination
msyl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
126601912
03460 Fanconi anemia pathway
126601912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msyl03032
]
126601912
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126601912
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
126601912
DNA replication proteins [BR:
msyl03032
]
Eukaryotic type
DNA Topoisomerases
126601912
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
126601912
FA (Fanconi anemia) pathway
126601912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_GRF
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-C2H2_10
Motif
Other DBs
NCBI-GeneID:
126601912
NCBI-ProteinID:
XP_050124642
LinkDB
All DBs
Position
15:9737982..9756014
Genome browser
AA seq
969 aa
AA seq
DB search
MSGGIRVLNVAEKPSVAKSVATLLSGNQGQGLRVREGRSRYNKIYEFNYSINGRPCHMLV
TSVTGHLMELEFEDRFRKWHACDPALLFTAPVHKKVPEDKLDIKRTLEEEARRCQWLVLW
LDCDREGENIAFEVIEVCTAVNRHLTIRRARFSALTERDIYNAVQNLVNANKFFADAVDA
RQEIDLRIGASFTRFQTMLLRDAFVIDSTASDRNLVLSYGPCQFPTLGFVVERYWEIQSH
EPEEFWTINCSHRSDEGIATFHWMRGHLFDYACAVVIYEMCVEEPTATVTKVRQQEKLKK
PPNPLNTIQLEQRASIYFRMSSEHTMKVAEELYQAGFISYPRTETDGFSERTDLRAIVEE
QQRHPGWGSYAQRLLDPASGLWKNPSNGGHDDKAHPPIHPTKFSSGESGWSQDHHRLYEL
VVRHFLACVSQPAVGAETTVEIDIAGELFSASGRVILAKNYLDVYRFESWGGSLLPTYEY
GQQFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDSS
MRFSPTNLGEALVMGYDDMGYKLWKPYLRAVMERDMKAVSEGAKSKAEVLETCLQQMKAC
FLDARLNKVKLFEAMSVFFERSGRPSGDDQHTSGEFIRRCGLCHEADMVLRQNRDGNFMV
GCLGYPQCRNAVWLPGSVSEAAVTTNVCNSCTPGPVYLIQFTFRRLEIPPNYSANHLGCI
GGCDETLRQLTEICGTGSRLSARGRGPATSNNNVPRSNTRQGPCIYCHQAGHSSGDCPSQ
SSGPRRVRPQSMNVQSARGGGPAMSNNVQRSNTRQGACIYCHQTGHSSGDCPSQSSGPQS
ARPRPMNVQSGQVSISCSTCGAPCALRTANTTANRGRKFYSCQSQACNFFVWEDSLNNDN
GGRGFQRANVSAPASNPTRNGGSGRGGRVAGDAAGVSFVSATGDPVSGRRCFACGDPSHF
ANVCPNRGN
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggggtattagggtgctgaacgtggcggagaagccatcggtggctaagtcggtg
gcgacattactgtcagggaaccaagggcaagggctgagagtgagggaaggccgatcccgc
tacaacaaaatctacgagttcaactactcaatcaatggccgcccctgccacatgctcgtc
acctccgtcaccggccacctcatggagctcgaatttgaggaccgctttcgaaagtggcac
gcctgcgaccccgcccttctctttaccgctcccgtccataaaaaagtccctgaggacaag
ttggatatcaagaggacgttagaggaggaagcaaggaggtgccagtggcttgtcttgtgg
ctcgattgtgatagagaaggagaaaacattgcgtttgaagtcatagaagtatgcacagcc
gtgaatcgtcatcttaccataaggagggctcgtttctcagctttgactgaaagggatatc
tataatgcagtgcagaatcttgtcaacgcaaacaaattctttgctgatgcagtggatgct
aggcaagaaatagatcttcggattggtgcttcgtttactaggtttcagactatgctgctg
agagatgcatttgttattgattccactgcaagtgacagaaatcttgttctaagttatggt
ccttgccagttccctacacttggatttgttgtggagagatattgggaaatacagtcgcac
gagccagaggagttttggaccataaactgttcacacagatcagatgaaggcattgctaca
ttccattggatgcgtggacatttatttgactacgcttgtgctgttgttatttatgaaatg
tgtgttgaggaaccaactgctactgtgacaaaggttagacaacaggagaagctgaaaaag
cctccaaatcctctgaatacaattcagcttgaacagcgtgcctcaatatactttcggatg
agttctgaacacacaatgaaggtggcagaagagctgtaccaagctggtttcatcagttat
cctcgtacggaaactgatggcttctctgaaaggacggatttgcgtgcaattgtggaagaa
caacaaaggcatcctggatggggatcatatgctcaacgattgttggacccagcatctggg
ctttggaaaaaccctagcaatggtggacatgatgacaaggcccatccacctatccacccc
actaaattttcttctggagaatcaggatggagtcaagatcaccatagattgtatgagctg
gttgttcgccatttcctggcatgtgtctcacagccagctgtaggggcagaaaccactgtt
gagattgatattgctggtgaattgttctctgcttcagggagagttatactagcaaaaaat
tacttagacgtttatcgatttgaatcatggggaggttcgttgctaccaacatatgaatat
ggacaacagtttgtcccaacaacattaactcttgattcgggagtcactaggcctccacca
cttttaagtgaagctgatttgctgagttgtatggacaaggagggcattggcacagatgca
acgatgcatgatcacataaaaaagctgctggatcgattttatgcaaccaaggactcaagc
atgcgtttctcaccgaccaatcttggcgaagcgttggtgatgggatatgatgacatgggg
tataaactgtggaaaccataccttagagctgttatggagcgtgacatgaaagctgttagt
gaaggtgctaagagcaaagctgaagttttggaaacttgcttgcagcaaatgaaagcttgc
ttcctagatgcaaggttgaacaaagtaaaactctttgaagccatgtcagtattctttgag
agatctggcaggcctagtggggatgatcagcacacatctggagagttcattcggcgatgt
ggactgtgccatgaagcagatatggtacttagacaaaaccgggatggaaatttcatggtt
ggatgcttgggttatcctcagtgtaggaatgctgtctggctccctggatctgtatcagaa
gctgctgtaacaactaacgtttgcaactcatgcacgccaggtcctgtttacttgattcaa
tttacatttcggcggctagaaataccaccaaactatagtgccaaccatttgggttgcatt
ggcggctgtgatgagactcttagacagttgacggaaatctgtggaactggttctcggtta
tcagcaagagggcgtgggccagcgacatccaacaataatgtcccacgaagtaataccagg
cagggtccttgcatatattgtcatcaagcagggcattcttcaggcgattgcccttcccaa
tcttcaggtcctcgaagggtgaggcctcaatctatgaatgttcaaagtgcaagagggggt
ggaccagcaatgtccaacaatgtccaacgaagtaatactaggcagggtgcttgcatatac
tgtcatcaaacgggtcattcttcaggcgattgcccttcccaatcttcaggtccgcaaagt
gcaaggcctcgacctatgaatgtacaaagtggacaagtatcaatctcatgttctacgtgt
ggtgcaccatgtgctttacgaacagctaatacaacagctaacagaggaagaaaattctac
tcttgtcaatcgcaggcgtgcaacttttttgtatgggaggatagcctcaacaatgataac
ggaggaagaggttttcagcgtgcaaatgttagtgccccagcatctaatcccactcggaat
ggtggcagcggtaggggtggccgggttgcaggagatgctgctggggtgagttttgtatca
gcgactggtgatcccgtctccggtagaaggtgttttgcttgcggagatccatcacacttc
gcaaatgtttgcccgaaccgtggtaactga
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