Malus sylvestris (European crab apple): 126602155
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Entry
126602155 CDS
T09027
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03030
DNA replication
msyl03420
Nucleotide excision repair
msyl03430
Mismatch repair
msyl03440
Homologous recombination
msyl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
126602155
03420 Nucleotide excision repair
126602155
03430 Mismatch repair
126602155
03440 Homologous recombination
126602155
03460 Fanconi anemia pathway
126602155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msyl03000
]
126602155
03032 DNA replication proteins [BR:
msyl03032
]
126602155
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126602155
Transcription factors [BR:
msyl03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
126602155
DNA replication proteins [BR:
msyl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
126602155
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
126602155
MMR (mismatch excision repair)
126602155
DSBR (double strand breaks repair)
HR (homologous recombination)
126602155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DacZ_A
DUF936
DUF223
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
126602155
NCBI-ProteinID:
XP_050124945
LinkDB
All DBs
Position
15:complement(16992922..16995922)
Genome browser
AA seq
646 aa
AA seq
DB search
MPVNLTPNAIAVVIGGDLNLKPLVQVVDIKLIGTQERYRFMVSDGVSSQHAMISSQLNDR
IKTNRVQIGSVVQLTEYICTVLQNRQVIVVLNMETIILNCDIIGNPKPYGAPNSDTPNAL
PNGSFQQSASNRMTSQNPIHNGQNIRPTFHSERPNVRPRLHPESSAHNAPNIRATVQPPY
QPPPQYKNRGPIMKNEAPARIIPINALNPYQGRWAIKARVTAKGDPRRYNNAKGDGKVFS
FDLLDSEGGEIRITCFNAVLDRFYDIIEVGRVYLISKGSLKPAQKNFNHLKNDWEITLDA
SSTVDLCPDEDGSIPAQNFDFRPISEIENGESNSIVDVIGIVISVNPSVPIMRKNGMETQ
RRILNLKDWSGKSVELTLWGDVCNREGQKLEEMLASGFSPVLAVKAGKINDFSGKSVGTI
HSTQLFINPEISDALTLRDWFDRGGKDTASVSISKDFVPGGTKNEIRKTVSQIKDEGLGR
SDKPDWVTVKATISFIKTDSFCYTACPLMIGDRQCNKKVSRSGNRGWQCDRCNQEFEECD
YRYLLQAQIQDHTGLTWATAFQETGEEILGCSAKELYLLKYEEQDDSRFGDIVRSSIFNR
FLFKLKIKEEMYGDEQRVKITIVKADKENCSSESRYMLDRISKYSR
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtgaacctgacgccgaacgccatcgcggtggtgataggcggcgacttgaatttg
aagccgttggtgcaggtggtcgatattaagctcatcggcacgcaggagaggtaccgattc
atggtctccgacggcgtttcgtctcagcacgccatgatctcttcgcagctcaacgaccga
atcaagaccaaccgtgtccagataggttccgtcgtccagctcaccgagtacatttgcacc
gttctccagaaccgccaggttattgttgtgctgaacatggaaactatcatactgaactgt
gacattattgggaatccaaaaccatatggtgcacctaattcagatactccaaatgcattg
cctaatggcagttttcagcagtcagccagtaatcgtatgacttcgcaaaatcctattcac
aatgggcagaatatcagacctacttttcattctgagaggccgaatgtcagacctcgtctt
catcctgaaagctctgcacacaatgcgccaaatattcgagctactgttcaacctccttac
caaccacctccacagtacaaaaatcgtggtccaatcatgaagaacgaggcaccagcacgg
atcattcccattaacgctctgaatccttatcagggaagatgggctatcaaggcaagggtc
acagcaaaaggggacccccgtcggtataacaatgctaaaggagacggtaaagttttctct
ttcgacctgcttgactcagaaggcggggaaataagaattacctgcttcaatgctgttctt
gaccgcttctatgatattattgaggttggcagagtttacttgatttcaaagggaagcttg
aaacctgcacagaagaatttcaaccatctgaagaatgactgggagataactttggatgca
agttcaactgtggacctctgccctgatgaagatggttccataccagcgcaaaacttcgac
ttcaggccaattagtgaaattgaaaatggtgaaagtaattctattgttgatgttattggt
attgtgatatctgtcaatccttctgttcctatcatgaggaagaatggtatggaaactcag
agaagaattctgaatctaaaggattggtcgggcaagagcgttgagctaaccctttggggg
gatgtctgcaacagggaaggtcaaaagcttgaagagatgttggcttctgggttttcccca
gttttagctgttaaagctgggaagattaatgatttcagtgggaagtccgttggaacaatt
cattctacacaactattcataaacccagaaatttctgatgctcttaccttgagagactgg
tttgaccgagggggaaaggatactgcttctgtctccatttctaaagactttgttccggga
ggaactaagaatgagatacgcaaaaccgtttctcagattaaggatgaaggtcttggaaga
tcagataagccagactgggtcactgtgaaggcgacaatatctttcattaagacagattct
ttctgttacacagcctgtcccttgatgattggagataggcagtgcaacaaaaaggtgtcg
aggtcaggaaacagaggatggcagtgtgacaggtgcaatcaagaatttgaggagtgtgat
tatcggtatcttcttcaggcccaaattcaagaccatactggattgacttgggcgacggct
tttcaggaaactggggaagagatcttgggttgctcagcaaaggagctgtacttgttgaag
tacgaagagcaggatgattcaagatttggagacatagtccggagcagtatctttaaccgg
tttctgttcaagcttaaaatcaaagaggagatgtatggcgatgagcagagggtgaagatc
accatagtgaaggcggataaggagaactgttcttcagagagcagatacatgcttgatagg
atttcaaaatattctaggtaa
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