Malus sylvestris (European crab apple): 126602384
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Entry
126602384 CDS
T09027
Name
(RefSeq) vacuolar protein sorting-associated protein 35B-like isoform X1
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
126602384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
msyl04131
]
126602384
Membrane trafficking [BR:
msyl04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
126602384
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
126602384
NCBI-ProteinID:
XP_050125184
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Position
15:582721..589118
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AA seq
797 aa
AA seq
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MRSDVIGDEEKWLAEGIAGIQHHAFYMHRALDANNLRDALKFSALMLSELRTSRLSPHKY
YDLYMRAFDELRRLEMFFKDESRHGVSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKE
APAKDVLKDLVEMCRGVQHPIRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVMDAVDFVL
QNFTEMNKLWVRMQYQGPGHVREKREKERSELRDLVGKNLHVLSQIEGVELEMYKATVLP
RVLEQVINCKDELAQYYLMDCIIQVFPDEYHLQTLETLLAAFPQLQPTVDIKTVLSQLME
RLSNYAASSTDVLPEFLQVEAFAKLSSAIGWVIEAQTDMPIVGAISLYVSLLTFTLRVHP
DRLDYVDQVLGACVKKLSGETKLEDHRATKQVVALLSAPLEKYDDIVTALTLSNYPRVMD
YLDNGTNKVMAMVIIQSIMKNNSCISTADKVEVLFELIKGLIKDLDSTSADELDEEDFAD
EQNSVARLIHMLYNDDPEEMFKILCMVKKHIMGGGPKRLPFTVPPLILSALKLVRRLQGQ
VGEVVGEEMPATPKKIFQTLNQIIESLSSVPSPELALRLYLECAEASNDCDLEPVAYEFF
TQAFILYEEEVADSKAQVTAIHLIIGTLQRMNVFGIENRDTLTHKATGYSAKLLKKPDQC
RAVYACSHLFWVDDQDGVKDGESGFCYRVLLCLKRALRIANAAQQMASATRGSSGPVPVT
LFVEILNKYLYYFEKGNPQITSAAIQGLVDLIKNEMQGDSANANPAPDAFFASTLRYIQF
QKQKGGVMGEKYASIKV
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgagatccgacgtaatcggagacgaagagaaatggctggcggaaggcatcgccggcatt
caacaccatgccttctacatgcatcgcgctctggacgccaacaatctcagagacgccctc
aaattctcggccctgatgctgtcggagctcagaacctctcggctttcgcctcacaaatac
tacgatctctatatgcgagctttcgatgagctgaggaggctggagatgttcttcaaggac
gagagcagacacggcgtttcgatcatcgatctctacgaacttgttcagcatgccggcaac
attttaccaagattgtatctgctatgtacggtaggatccgtgtacattaaatctaaggaa
gcgccagccaaggacgtacttaaagatcttgtcgaaatgtgtcgcggcgttcagcatcca
attcgagggctctttttaagaagctatctttctcaagtcagcagagacaagttgcctgat
attggttctgagtatgaaggggatgctgacactgtcatggatgctgtagattttgtgcta
cagaattttacagaaatgaataagctttgggttcgaatgcagtatcagggacctggtcat
gtgagagagaagcgcgaaaaggaaagaagcgaacttcgtgatcttgttgggaagaatctc
catgttctcagtcagatagagggtgtggaacttgaaatgtacaaagccactgttcttcct
agagtattagaacaggttatcaactgtaaagatgagctggcccaatattatttgatggat
tgcataatccaggtctttccagatgagtaccacttgcagacactggagacattgttggct
gccttcccccagcttcagccaacagttgatatcaagactgtgttatctcaattaatggag
aggttatcaaactatgctgcgtcaagtacagatgtattacctgaatttcttcaagtggaa
gccttcgctaaattaagcagtgccattgggtgggtgatagaagcacagacggacatgcct
attgttggagccatatctttgtatgtctctcttcttacatttaccctccgtgttcatcct
gatcgccttgattatgtggatcaagtactgggagcatgtgttaagaagctatccggagaa
accaaacttgaagaccatagagcaacaaaacaggttgttgcactgttgagtgctcccttg
gagaaatacgatgacattgtcacagccctcacactttctaattatcctcgagttatggat
tatcttgataatggaacaaataaagtcatggcaatggtcattatccaaagcattatgaag
aacaactcttgtatctccacagctgataaggtggaggtgttgtttgaattaattaaaggg
ctcatcaaggacttggattctacttctgcagatgagcttgatgaagaggattttgcggat
gaacaaaattctgttgctcgccttatacacatgctttataatgatgatccagaagaaatg
tttaagatcttgtgtatggtcaagaagcatataatgggtggaggaccaaagcgcctacct
tttactgtacctcctcttatattatctgcactcaagttggttaggcggctgcaaggtcag
gttggagaggttgtgggagaagaaatgcctgccacaccgaagaaaatttttcagacttta
aatcagatcattgaatctctttcctcagttccgtctcccgaactggcattaagattgtac
ttggaatgtgctgaggcttctaatgactgtgatctggaacctgttgcttatgaattcttc
actcaggcatttatattatacgaagaagaagttgcggattccaaagcccaggtgactgca
atacatctcattattgggactcttcagaggatgaatgtatttggcattgagaatcgggat
actttaacacacaaggctactggatattcagcaaagcttttgaagaaacctgatcagtgc
cgagcggtgtatgcatgttcacatcttttttgggtagatgatcaggatggtgttaaagat
ggagaaagtggtttttgttacagggtcttgctttgtttgaaacgcgcattgagaattgca
aatgctgctcaacagatggccagcgcaacgcggggtagcagcgggccagtcccagtcaca
ctctttgttgagatactgaacaagtacctctactattttgagaaaggaaacccccagatt
acaagtgctgcaatccagggattagtggatttaattaaaaatgagatgcaaggtgactct
gcaaacgcgaatccagccccagatgcatttttcgccagcacattgcggtacatacagttc
caaaaacagaaaggtggggtgatgggcgagaaatatgcgtctatcaaggtctga
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