Malus sylvestris (European crab apple): 126602424
Help
Entry
126602424 CDS
T09027
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03013
Nucleocytoplasmic transport
msyl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126602424
03015 mRNA surveillance pathway
126602424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126602424
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
126602424
mRNA cycle factors
P-body specific factors
126602424
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
126602424
NCBI-ProteinID:
XP_050125240
LinkDB
All DBs
Position
15:complement(53129601..53138623)
Genome browser
AA seq
489 aa
AA seq
DB search
MMKGQLDRTKVVLRHLPPSISQAALVEQIDVFFAGRYSWVAFRPGKRSQKNQSYSRAYID
LKRPEDVFEFAEFFDGHLFVNEKGGQFKVIVEYAPSQRVPEHWSKKDGREGTIFSDPEYL
EFLEFIAKPAENLPSAELQLERREAERSGAGKDAPIVTPLMDFVRQKRAAKAGSRRLLSN
GKASRRAGVSSSRSPTLPMTKRGSERKKNSASMGLSDLQYVVRDARKNTGDKNKSTHILV
PKREDQQPSEKSATLASAVGTELSEESGVSGVDAGKKKVLLVKGKEKEISHVPPNMSQQQ
SSYSKNMGGSIALKQNPRCHDNGRIIKGILLNKEARQSQSSGIHSGQQIQSSSSDRDKRF
PRSQHVQLILKDINGTPDHKIVGNDLHDIYSEKQEKRTKNKDRPDRGVWTPLNRLDGSSA
SDESFSSAFQPDHSLLDSSEGSHKHHGRRGAKHGKELDGSPVAGEGKHSKKGYGSHEKQV
WIQKSSSGS
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagggccagttggatcgtaccaaggtggtgctgcgacacttgccgccttcgatt
tcgcaagctgcgcttgtggaacaaatcgacgttttctttgctggccgctacagttgggtt
gcttttcgtccgggcaagaggagccaaaagaatcagtcatattctagagcctacattgat
ttgaagaggccagaggatgtattcgagtttgctgaattctttgatggtcatctgtttgtt
aatgagaagggcggtcaatttaaagttattgttgagtatgctccatcacaacgtgttcca
gaacattggtctaagaaggatggtcgtgaaggaaccatattcagtgatcccgagtatctg
gagtttcttgaatttattgcaaagcctgctgagaatcttccaagtgcagagttacaattg
gagagaagagaagcagaacgatctggtgctggaaaggatgctcctatagttacaccatta
atggactttgttcgtcaaaaaagggctgccaaggctggatctcggaggttactgtctaat
ggtaaagcaagcagaagagctggtgtatcatcttctcgaagtcctactttacctatgacc
aaacgaggttctgagaggaaaaagaattctgcctcaatgggcctgtctgatttgcagtat
gttgtgagggatgctagaaagaacaccggtgacaaaaacaagtcaacacatatattggta
cccaagcgcgaggatcagcaaccttccgagaagtctgccactttggcatctgcagttgga
actgaattgtcggaagagagtggagtttctggtgtggatgctgggaaaaagaaagtcttg
cttgtgaaagggaaagagaaggagatatctcatgtgccgccaaacatgtctcagcagcag
agttcatattctaaaaacatgggtggttcaattgcactgaaacagaacccgcgttgtcat
gataatggaaggattataaaaggcatacttctaaacaaggaggcacgtcaaagtcagtct
tctgggattcactcggggcagcaaatccagagttcgagttcagatagggacaaacgattt
cctcgatcgcaacatgtgcaattgattttaaaggatataaatgggactccagatcataag
atagttgggaatgacttgcatgatatttatagtgagaagcaggagaaacggacaaaaaat
aaggacagacctgatcgtggtgtatggacgcctcttaatcgtttagatggatcatctgca
agcgatgagtctttctcatctgcttttcaaccggatcactcacttttagattcttcagaa
ggctctcataaacatcatggtcgccgtggagcaaaacatggtaaggaacttgatggctca
ccagttgcaggtgaaggaaaacattcgaagaaaggctatggctcccacgagaaacaagtg
tggattcagaagtcgagttctggttcctag
DBGET
integrated database retrieval system
