Malus sylvestris (European crab apple): 126602439
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Entry
126602439 CDS
T09027
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03013
Nucleocytoplasmic transport
msyl03015
mRNA surveillance pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126602439
09122 Translation
03013 Nucleocytoplasmic transport
126602439
03015 mRNA surveillance pathway
126602439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126602439
03041 Spliceosome [BR:
msyl03041
]
126602439
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126602439
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
126602439
Spliceosome [BR:
msyl03041
]
Complex C
Other components
EJC/TREX
126602439
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
126602439
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
126602439
NCBI-ProteinID:
XP_050125260
LinkDB
All DBs
Position
15:complement(8861795..8867135)
Genome browser
AA seq
426 aa
AA seq
DB search
MGETRDDVYDEELVDYEEEEEKAPDSAAKVNGEAPKKGYVGIHSSGFRDFLLKPELLRSI
VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVSALVLC
HTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKLHKDLLKNECPHIVVGTPGRILALA
RDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKDIRPVCK
KFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEAEKNRKLNDLLDALDFNQVVIFVKSVSRA
AELNKLLSECNFPSICIHSGMSQEERLKRYKGFKEGQNRILVATDLVGRGIDIERVNIVI
NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNDVQERFEVDIKELPEQIDT
ATYMPS
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaaacaagggacgacgtctacgacgaggagctcgttgattacgaagaagaggag
gagaaggcccctgactctgcagctaaagtcaacggcgaagcccccaaaaagggatatgtt
ggaattcacagttcagggttcagagatttccttttgaagcctgagcttcttcggtctatt
gtcgactctggatttgagcatccttctgaagtgcaacatgaatgtatccctcaagctatc
ctcggaatggatgttatttgtcaagctaaatctgggatgggaaaaactgctgtttttgtt
ctatcatctttacagcagatcgaccctgtcgcaggccaagtctctgcccttgtcctttgc
catactagagaattagcataccagatttgtcatgaatttgagaggttcagtacatacttg
cctgatctcaaggttgctgtcttctatggtggtgttaatatcaaacttcacaaagattta
ctgaaaaatgaatgcccacacattgttgttggaactcctggaagaatactagcactggca
agagataaagacctctccttgaagaatgtgaggcattttatccttgatgaatgcgacaag
atgcttgaatcactcgacatgaggagagatgtgcaggagatcttcaagatgacgcctcac
gataagcaagtgatgatgttttccgcaacactcagcaaagacatccgcccagtttgcaag
aaatttatgcaagatcctatggaaatatatgttgatgatgaagccaagttgaccttgcat
ggtctagtgcagcactacatcaagttaactgaggcagagaagaaccgcaagttgaatgac
ctccttgatgcattggacttcaatcaagttgttatattcgtcaaaagcgttagcagagct
gctgagctgaacaaactactttcagagtgtaactttccctctatatgcatccattctgga
atgagccaagaagaaaggttgaagcggtacaaaggattcaaggagggtcagaacaggatt
cttgtggcaactgatttagtcggtagaggaattgacattgagcgtgttaacattgttatc
aactacgacatgccagattccgctgacacttatttacacagggttggcagagctggtagg
tttggcaccaaaggtcttgcaattacgtttgtttcatccgcagcagactctgatgttcta
aatgatgttcaggagaggtttgaggttgatataaaggagcttcctgaacagatcgatact
gccacatacatgccatcttaa
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