Malus sylvestris (European crab apple): 126603311
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Entry
126603311 CDS
T09027
Name
(RefSeq) exosome complex exonuclease RRP46 homolog
KO
K12590
exosome complex component RRP46
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126603311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126603311
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
126603311
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
126603311
NCBI-ProteinID:
XP_050126073
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Position
15:30595684..30598858
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AA seq
237 aa
AA seq
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MEIDRVDGRTPNQLRPLACSRGFLNRAHGSASWTQGDTKVLAAVYGPKAGTKKNENPEKA
CIEVVWKPKTGLSGKLEREYEMILKRTLQSICILTLNPNTTTSVIVQVVNDDGSLLPCAI
NAACAALVDAGTPLKHLAVAICCCLAESGYIILDPSKLEEQKMKAFAYLVFPNSLTTLPE
GGLLVGGEPMEHGIITSVTQGAMSVDDYLHSLERGCAATAKMSAFLQKRLQPLLSDD
NT seq
714 nt
NT seq
+upstream
nt +downstream
nt
atggaaattgacagagtcgacggacgcacgccaaaccagttgagaccattggcttgttct
cgcggcttcctcaaccgcgctcacggctctgcaagttggactcaaggagatacgaaagtt
ctggctgcagtttatggacctaaagcaggaacaaagaagaatgaaaatcccgaaaaagct
tgcattgaggttgtttggaaacctaaaacaggcctgagtggaaaattggagagggaatac
gagatgatattgaagagaaccttgcaaagcatctgcatactgactctaaacccaaatacc
acaacctcggtcattgttcaggttgtcaatgatgatggttctcttctgccatgtgccata
aatgcagcgtgtgctgcccttgttgatgccgggactcctctaaaacatcttgctgtcgct
atatgttgttgcctggcagagagcggatacatcatattggaccccagcaagctggaagag
cagaaaatgaaggcgtttgcgtatttggtcttcccaaactctctcacaacccttccagaa
ggaggattactggtgggaggtgaacccatggagcatgggatcatcacctcagttacccag
ggcgcaatgtcagtggacgactatcttcacagtttagaacgagggtgcgccgccactgca
aagatgtcggcatttctccaaaagagattgcaaccactgctttcagatgattaa
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