Malus sylvestris (European crab apple): 126603469
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Entry
126603469 CDS
T09027
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126603469
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msyl03041
]
126603469
Spliceosome [BR:
msyl03041
]
Complex A
U1 snRNP components
U1 related factors
126603469
Complex B
126603469
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
Motif
Other DBs
NCBI-GeneID:
126603469
NCBI-ProteinID:
XP_050126273
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All DBs
Position
15:4532813..4553172
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AA seq
1023 aa
AA seq
DB search
MANNPQSSAAQPFRLPPVAPMGPQSFGSSPLQYRPVVPTQQGQQFISPAPQQFQPVGQGI
PSPNVGMPASQSQQLQYSQPMQPYPLRPSQPGHPHSSQALPMQYMQTRPITSIPSQSQQP
VPPFNNQMPGMPYSSSYVFTPPTYAQPQNNVNSQFQPMSQMQAHVVSATGQPWVSSGNQG
VAVPFPVQQSSQQSSSTPSTDSAVNVSSQAQQSSSDWQEHLAVDGRRYYFNRRTRQSNWE
KPLELMTPMERADASTVWKEYTSADGKKYYYNKVTRESKWTIPEELKLAREQAQRELIQG
THSELNLTSHTPPAVASAETPMGASSVGPSTSSALPVMVSSPVAVTPVSSFSNPSAITPT
GSSVASGAQPSITGAVGSQPSAVTVSPLPASVSGSSGVPPTSVNTTTNSLSTYETVASQD
ISSSADGTLTQDIEEAKRGMAVAGKVNVTPSEEKTFDDEPLVYANKQEAKTAFKSLLESA
NVQSDWTWEQTMREIITDKRYGALRTLGERKQAFNEYLGQRKKLENEERRVRQKKAREEF
TKMLEESKELTSATKWSKAVSMFENDGRFKAVERGRDQEDLYESYIVELERKEKEKAAED
HKQNIVEYRKFLESCDFIKVNSQWRKVQDRLEDDERCLRLEKLARLLIFQDYIRDLEKVE
EEQKKLQKEQLRRVERKNRDEFRKLMEEHVADGTLTAKTLWRDYCLKVKDLPPYEAVALN
TSGSTPKELFDDVFEELEKQYHDDKARIKDAMKSGKVAMASTLAFEEFKVPILEEIGSPP
ISDINFKLVYEELLERAKEKEEKEAKKRQRLADDFNKLLHTIKEITASSNWEDSKQLFEE
TQEYRSIGEDSVSREIFEEYITNLQERAKEKERKREEEKAKKEREREEKEKRKDKERKEK
EREREKEKGRERSKKDETDSENVDITDTHGHKEDKKREKDKDRKHRKRHQSSVDDVGSDK
EEKEESKKHRHSSDRKRSRKHTPESDSESRHRRHRREHRDGSRRIGGHDDLEDGELGEDG
EIK
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atggcgaataaccctcaatcctcagctgcgcagccatttcggcttcccccagttgctccc
atgggtcctcagagttttggttcatctcctcttcaataccgaccagtggttccaacacag
caaggacagcaatttatttcaccagctccccaacaatttcagcctgtgggacaaggtatt
ccttctccaaatgttgggatgcctgctagtcaaagtcagcaattacaatattctcaacca
atgcaaccgtatcctctcaggccaagtcagcctggtcatcctcactcgtcacaggcgttg
cctatgcaatacatgcaaacgaggcctattacatctatcccatcacagtctcagcaacct
gtcccaccttttaataaccaaatgcctggaatgccttattcttcctcatatgtgttcact
ccgcctacgtatgcccagccacaaaataatgtcaattcacagtttcagccgatgtctcaa
atgcaagcacatgttgtatctgctacaggacagccttgggtgtcctctggtaatcagggt
gtagcagttccttttccagtacagcagtctagccaacaatcttcaagcactccttccaca
gattctgctgtaaatgtttctagccaagcacagcaatcttcttcggattggcaagagcat
ttggcggttgatggaagaagatattatttcaacagaaggacaagacaatctaattgggag
aagcctttagaattgatgacaccgatggagagggctgatgcatcaactgtttggaaggag
tatacatctgcagatgggaaaaagtattattacaacaaggttacaagggagtctaagtgg
acaattccagaggagttgaagttggctcgtgaacaggctcaaagagaactaatccaagga
acacattcagaattgaatttgacttctcatacccctcctgctgttgcttcagctgaaaca
cctatgggagctagttcagttggccccagcacttcttcagccctacctgtgatggtctcg
agccctgttgcagttacacctgtgtcttccttttctaatccttctgctatcacacctact
ggatcatcagttgcttctggtgcacagccttccataactggtgccgttggcagtcaacct
tctgcagttactgtgagtccactgcccgcttctgtttcagggagttccggagttcctcct
acttcggtcaataccactacaaattcactgagtacttatgaaactgtagcatctcaagat
atttcaagttcagctgatggaactttgactcaagatattgaggaagccaaaagaggtatg
gcagttgctggaaaagtcaatgtgactccttcagaggagaaaacatttgatgacgaacca
ttggtgtatgccaataagcaggaggcaaaaactgcattcaaatcacttctggaatctgca
aatgttcagtccgattggacttgggagcagacaatgagggagatcattactgacaaaaga
tatggcgcattaagaactctaggtgagaggaagcaagcatttaatgagtacttgggtcaa
aggaaaaaactggagaatgaagagaggcgcgtgaggcagaaaaaagctcgggaagaattc
acaaaaatgttggaagagtccaaggaacttacatcagcaactaaatggagcaaagctgtg
agtatgtttgaaaatgatggacgattcaaggctgtagaaagaggtagagaccaggaagat
ctttatgagagctacattgtagaactcgaaaggaaggaaaaagaaaaggcagctgaagac
cataagcagaatatagtagagtaccggaaatttctggaatcttgtgactttatcaaggtg
aacagtcagtggcggaaagttcaagatcgcttggaggatgatgagagatgcttgcgcctt
gaaaagcttgccaggttgctcattttccaggactatattcgtgacctcgagaaggtggaa
gaggagcaaaagaagttacagaaggaacaattgaggcgggtagaaaggaaaaaccgcgat
gagttccgcaagctgatggaagaacatgttgccgatggcactcttacagctaaaactctc
tggcgtgattactgtttgaaggttaaagacttgcctccttatgaagctgttgcattgaac
acctctggttcaacaccaaaagaattgtttgatgatgtttttgaagaattagagaaacag
tatcatgacgataaagctaggataaaggatgcaatgaagtcagggaaggttgccatggca
tccacattggcgtttgaagagtttaaggttcctattctggaagaaattggttctccacca
atatcagacattaacttcaagcttgtgtacgaggaattattagagagagccaaggagaag
gaggagaaagaggcaaagaagcgtcaacgacttgctgatgatttcaataaacttttgcac
acaatcaaggagataacggcttcttctaattgggaagatagcaaacagctttttgaagaa
acccaagaatacagatcaattggggaagatagcgttagtagggaaatttttgaggaatac
attacaaacttacaggagagggctaaagagaaggaacgcaagcgtgaggaggaaaaggcc
aaaaaagagagagaaagagaggagaaagagaagcggaaggataaagaaagaaaggagaag
gaaagagaacgtgaaaaagaaaagggaagggaacgatctaagaaggatgaaacagatagt
gaaaatgtagacataactgatactcatgggcataaagaagataagaagagggagaaagac
aaagatagaaagcaccggaagcggcatcaaagttctgtcgatgatgtaggttctgataag
gaggagaaagaggagtctaagaaacacagacatagtagtgaccgcaaaagatcaagaaaa
catacacctgaatctgacagtgaaagtcggcatagaaggcataggagagagcatcgggat
ggttcccgtcgaattggtgggcatgacgatcttgaagatggggagcttggtgaagatggg
gaaattaagtaa
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