Malus sylvestris (European crab apple): 126603484
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Entry
126603484 CDS
T09027
Name
(RefSeq) S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase-like
KO
K15449
tRNA wybutosine-synthesizing protein 1 [EC:
4.1.3.44
]
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
msyl03016
]
126603484
Enzymes [BR:
msyl01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.3 Oxo-acid-lyases
4.1.3.44 tRNA 4-demethylwyosine synthase (AdoMet-dependent)
126603484
Transfer RNA biogenesis [BR:
msyl03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
126603484
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Gene cluster
GFIT
Motif
Pfam:
Flavodoxin_1
Wyosine_form
Radical_SAM
Motif
Other DBs
NCBI-GeneID:
126603484
NCBI-ProteinID:
XP_050126296
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Position
15:1636120..1639458
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AA seq
644 aa
AA seq
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MFLSSAPARLTLLALLSATTVYCFYKSRRLRRLKLSLNPNPGSSPRRGKLFFVSQTGTSE
ALARRLLDFLTLKGVAFDLVDPNNYEPEDLPKETLVLIVASTWDDGKPPPNAKFFSNWLA
ESAEDFRVGSLLLSNCKFAVFGVGSRAYGSTFNAVGKDLARRMRALGASEMFPIWEGDVD
GGDLDEVFDAWSGKVVRFLKGGAAENGGVLGNGVGDECEAESFDGSDEEDEEEEDGGESG
VVDLEDIAGKGPSRRNPVAATKTNGTVNGKKEMVTPVIRASLTKQGYKIIGSHSGVKICR
WTKSQLRGRGGCYKHSFYGIESHRCMETTPSLACANKCVFCWRHHTNPVGKSWQWKMDDP
LEIVNSAIDQHTKMIKQMKGVPGVTLERLTEGLSPRHCALSLVGEPIMYPEINALIDELH
RRRISTFLVTNAQFPEKIKMLNPITQLYVSVDAATKESLKAIDRPLFGDFWERFIDSLTS
LKDKQQRTVYRLTLVKGWNTKDIDAYYNIFGLGNPDFVEIKGVTYCGTSATSKLTMENVP
WHADVKAFSEALALKSNGEYEVACEHVHSCCVLLAKSSKFKIDGQWFTWIDYEKFHDLVA
SGKHFDSKDYMAPTPSWAVYGAEEGGFDPYQSRYKKERHHRTNQ
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgttcctctcctccgctcctgcgcggctcactctcctcgccctcctctccgccaccact
gtctactgtttctacaaatcccgccgcctccgacgcctcaagctatccctaaaccctaac
cctggctcttcgcctcgcagaggcaagctcttcttcgtctcccaaaccggaacctccgaa
gccctagctcgtcgcctgctcgattttctgacgttaaaaggcgtcgctttcgacctcgtc
gaccccaacaactacgagcccgaagacctcccgaaggaaacccttgttctgatcgtcgct
tcgacgtgggatgacgggaagccgcctccgaacgccaagttcttctccaattggctcgcc
gagagcgcggaggacttcagggtgggatcgctgctgctctccaattgcaaattcgccgtc
ttcggcgttgggagccgagcctacggctctacgttcaatgcggtggggaaggacttggcg
aggaggatgagggcgttgggcgcttctgagatgtttccgatttgggaaggggacgtggac
ggtggtgatttagacgaggtgtttgatgcttggagtgggaaggtggtgaggtttctgaag
ggtggtgcggcggaaaatggcggggttttgggtaatggggttggtgatgaatgtgaagct
gagagctttgatgggtcagacgaggaggatgaggaggaggaggacggtggggagtcaggt
gttgttgatcttgaggatattgcaggtaaaggaccttcaagaaggaacccagtggcggcg
acgaagacgaacgggacagtgaatggtaaaaaagagatggtcactccggttattcgagct
agcttaacgaagcaggggtataaaattattggttctcatagcggtgtcaaaatttgcaga
tggacaaagtcgcagcttcgaggccgtggaggttgctacaaacactcgttttatggcata
gaaagtcacaggtgcatggagacaacccctagtctggcatgtgccaacaaatgtgttttt
tgttggagacatcacacaaatcctgtcggaaagagttggcagtggaagatggatgatccg
ttagagattgttaattctgccatagaccagcacacgaaaatgatcaagcaaatgaaagga
gttcctggtgttacattggagcgattaacagagggtctctctcccaggcattgtgcctta
tcacttgttggtgaacccatcatgtatcctgagattaatgcactcatagatgagctgcat
cgaagacggatttctacttttctagtaacaaatgctcagtttcctgaaaagatcaaaatg
ctgaaccctatcacacagttatatgtaagtgtagatgctgcaactaaagagagtttgaag
gcgattgataggccactttttggggatttttgggagcgattcattgattccttgacttcc
ctcaaggacaaacagcaacgaactgtttatcgcctaactctggtgaagggctggaataca
aaagatattgatgcttattataacatttttggcctcggcaatcctgattttgttgaaatc
aagggagttacatattgtggaacgtctgctacatcaaagttgacaatggagaatgtgccc
tggcatgctgatgtgaaagcattttcagaggccttagctttgaaaagtaacggggagtat
gaagtcgcatgcgagcatgtccactcgtgctgcgtcctcctggcaaaatctagcaagttc
aagattgatggccagtggttcacgtggattgactatgaaaagtttcacgatctggtggcc
tctggaaaacattttgacagtaaggattacatggctccgacaccttcatgggccgtttat
ggggcagaggaaggtggttttgatccgtatcagtctcgatacaagaaggagcgccatcac
agaacaaaccagtga
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