Malus sylvestris (European crab apple): 126603490
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Entry
126603490 CDS
T09027
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03013
Nucleocytoplasmic transport
msyl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126603490
03015 mRNA surveillance pathway
126603490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126603490
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
126603490
mRNA cycle factors
P-body specific factors
126603490
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
126603490
NCBI-ProteinID:
XP_050126304
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All DBs
Position
15:49825917..49832969
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AA seq
526 aa
AA seq
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MKVPLVRTKVLIRHLPPSLSQSDLFHQIDHLLADRYNWLCFRPGKNSQKNQRYSRAYIDF
KRPEDVFEFAEFFDGHVFVNEKGAQFKAIVEYAPSQRVPKPSTKKDGREGTIYKDPDYLE
FLKLIAKPVEHLPSAEIQLERKEAEQAGGAKEAPIVTPLMEYVRQKRAIGSGTQVSSVVR
KVRRRVGAASVSKRGSPSTKRVSEKKKYIIKDGTKHTSRRDKSTFNVLPRREDQLARSSG
KETLENEIGSVSGIPVISDSGKKKILLIKGKEREISPVEGMSQLGSSPISHAPKQNQRRE
ASGRMIRSILLNNEGRQSQTSTETQPQQKIQSLNSDVKRVSRPSNARSGLNGDISTNELN
SMSSEGDRKRATADRFTKKDVHGTTSVSERQEKNTRNKDRPDRGVWAPLHRADSSHASAE
HLPSSGLQRPQVISDSFEDFLGHGKGKDDSSYGSRTGEVINPTGGRNSSHVENGSHRHFG
RHGSAHNMKDDGSVNVGEGKPSKRGASVHGTPEQKQVWVQKSSSGS
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtgccattggtgaggacgaaggtgttaattcggcacttgcctccgtctctgtct
cagtccgatctcttccaccaaatcgaccacctgctcgccgaccgctacaactggctctgc
ttccgtccaggaaagaatagccagaagaaccagaggtattctcgggcctacatagatttc
aagcgacctgaagatgtttttgagtttgctgaattctttgatggacacgtgtttgtcaat
gagaagggggctcaattcaaggctatagttgaatatgcaccctcacagcgtgttccaaaa
cctagtacgaaaaaggatggccgtgaagggacaatatataaagatcctgattatttggag
ttcctcaaacttattgcaaagcctgtcgagcatcttcctagtgcagaaatacagctggag
agaaaggaagcagaacaagctggtggtgcaaaagaagctcctattgttacacccctcatg
gagtatgttcgtcaaaaacgagctattggaagtggtactcaggtttcatccgttgttcgg
aaggttagaagaagagtcggggctgcctctgttagcaaacgtggctcaccttctacaaaa
cgggtctctgagaagaaaaagtacataataaaggacggtactaaacacacaagtcgaagg
gacaaatccactttcaatgtgttacccaggcgagaggatcagttggctcgttcaagtgga
aaagaaacattagaaaatgaaattggttctgtttcaggaatccctgtgatttctgactct
ggaaagaagaaaatcttacttattaaaggaaaagagcgtgaaatatctcctgttgaaggt
atgtcacaacttggaagttctcctatttcacatgctccgaagcagaaccaaaggcgtgag
gctagtggaagaatgatcagaagcatacttttaaataatgagggacgccaaagtcaaact
tcaactgaaactcagcctcagcagaaaattcaaagtctgaactcagatgttaagcgagta
tctcggccttccaatgcaaggtcagggttgaatggtgacatctctactaatgaacttaac
tcaatgagctctgaaggggatagaaagagggcaacagctgatagatttacaaaaaaggac
gtgcatggtacaactagtgttagtgagaggcaggaaaaaaatacacgaaacaaggataga
cctgatcgtggtgtttgggctcctcttcatcgtgctgatagttcacatgctagtgctgag
catttgccatcctccgggttacaacgccctcaagtaatatctgattcctttgaagatttt
ctaggtcatggaaaagggaaggacgactcttcttatggaagcaggactggggaagttata
aatcctacaggtggacgtaatagttctcatgtagagaatggttcacatagacattttggt
cgccatggaagtgcccataatatgaaagatgacggttctgtaaatgtaggtgaggggaag
ccatctaaaagaggtgcttctgttcatggtacccctgagcagaaacaagtgtgggttcag
aaatcatcttcaggttcttag
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