Malus sylvestris (European crab apple): 126603891
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Entry
126603891 CDS
T09027
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
126603891
Enzymes [BR:
msyl01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
126603891
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
EMC7_beta-sandw
CarbopepD_reg_2
Endotoxin_C
BsuPI
YAF2_RYBP
RhgB_N
Motif
Other DBs
NCBI-GeneID:
126603891
NCBI-ProteinID:
XP_050126859
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Position
15:complement(47694867..47705898)
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AA seq
923 aa
AA seq
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MFLSSHYAGQDLVPKFRGGEPWKKVFGPVFIYLNSSTITDDLFWLWEDAKIQMMTEVQSW
PYSFSASEDFQKSSQRGNVSGRLLVLDRYISKEYTPANGAYVGLAPPGDAGSWQRECKDY
QFWTRADDHGYFSINNVRTGTYNLYAWVPGFIGDYRYDAVINITSGSFIEMGDLVYEPPR
DGQTLWEIGIPDCSAAEFYVPDPHPKYINRLFINHPDRFRQYGLWNGYAELYPDEDLVYI
VGVSDYAKDWFFAQVPRKTDNGHEGTTWQIKFELKNVDRNSCYKLRVAIASATLAELQVM
MDNGILQVTLSKPEGIVTGIRYNGIDNLLEIRNDESNRGYWDLVWNSATTGTTGIFDVIK
GTSFTIIMENEEQVELSFTRTWDPSQEGKLVPLNIDKRFIMLRGSSGFYSYAIYEHLKDW
PAFELGETRIAFKLRKDKFHYMAMADNRQRYMPLPDDRSPPRGQALAYPEAVLLVNPVEP
ELKGEVDDKYQYSCDNKDNKVHGWICTEPPVGFWQITPSTEFRSGGPFKQNLTSHVGPTT
LAMFLSAHYAGEDLVPKFAAGEEWKKVFGPVFMYVNSAYEGNDPLSLWEDAKSQMEMEVQ
CWPYSFPASEEFPKSYQRGNVRGRLLIQDRYISNDYISVNGAYVGLALPGDIGSWQRECK
DYQFWTTTDEDGYFCINGIRTGDYNLNASVPGFIGDYHYDVVMTITSGCDIDMGDLVYEP
PRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLFVNHPDRFRQYGLWERYSELYSDQDLV
YTVGVSDYSKDWFFAQVTRKNEDNKYQGTTWQIKFNLDNLDQTGSYKLRVALASATFSEL
QVRVNDPKANRPLFTSGMIGRDNSIARHGIHGLYWLYNVDVPSSRLVEGDNIIYLTQPRS
TGPFQGIMYDYLRFEGPPSPSSK
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgtttcttagtagtcattatgcgggacaagatctggtgccaaaatttagaggtggtgaa
ccatggaagaaggttttcggccctgtttttatctatctcaattcttccacaattacagat
gatctgttttggctatgggaggatgctaaaatacagatgatgacagaagtacaaagctgg
ccatatagtttctccgcatctgaggattttcaaaagtccagtcaacggggtaatgtgagt
ggtagactacttgtcttggacaggtacataagtaaagaatacacacctgcgaatggtgct
tatgttggtcttgccccaccaggagatgcaggatcatggcaaagagaatgcaaggactat
caattctggacaagggcagatgaccatggctacttttctattaacaacgtgcgtactggc
acttataatctttatgcatgggtacctggttttattggagattaccggtatgatgctgtc
attaatataacatcaggttcttttatcgaaatgggtgatcttgtgtatgaacctccaaga
gatgggcaaacattgtgggaaataggcattcctgattgttctgctgcagagttttatgtt
cctgatcctcatccaaagtatatcaacagacttttcataaatcatcctgacaggttcagg
caatacgggctctggaacggatatgctgaattatatcctgatgaagacttggtttacatt
gtcggtgttagtgattacgctaaagattggttctttgctcaggttcccaggaaaacagac
aacggacatgaaggaacaacatggcagattaagtttgaactgaaaaatgtggatcggaac
agttgctataaattgcgagttgcaattgcatctgcaactcttgctgaattgcaggtaatg
atggataatgggattctccaagtgacgctatcaaagccagagggaatcgtgactggaatt
cgatacaatggcatcgataacttgcttgaaattcgtaacgatgaatctaacagagggtac
tgggaccttgtttggaactcagctactactggaacaacaggaatatttgatgtgatcaaa
ggaacaagctttacgattataatggaaaatgaagaacaggtggagctctctttcacaaga
acttgggatccctctcaagagggcaaactcgtacccttgaatattgataaaaggttcatt
atgcttcgaggttcttcaggcttctattcctacgccatttacgagcacttgaaggactgg
cctgctttcgagcttggagaaaccagaattgccttcaaactcagaaaagacaagttccac
tacatggccatggcggacaataggcagagatacatgcccttgcctgacgaccgttcacca
ccgagaggccaagccctggcctatccggaggccgttcttcttgtcaaccctgtggagccg
gagcttaaaggagaagtggatgataagtaccaatattcatgtgacaacaaggataataag
gttcatggatggatatgcaccgagccgccagtggggttctggcaaattaccccgagcact
gagtttcgatctggtggaccctttaagcagaacctcacttcccatgttggccccaccacc
cttgctatgtttctaagtgcacattatgctggagaagatttggtgccaaaatttgcagcg
ggtgaggaatggaagaaagtttttgggccagtttttatgtatgttaattccgcatatgaa
ggaaatgacccactttcgttatgggaggatgctaaatcacagatggagatggaagtccag
tgctggccctacagcttcccagcatctgaggaatttcccaagtcataccaacggggtaat
gttaggggcagactacttattcaagatagatacattagcaacgattatatatctgtcaat
ggtgcgtatgttgggttagccctgccaggagacattggatcgtggcaaagagaatgcaag
gactatcaattctggaccacaactgatgaagacggctacttttgcatcaatgggatacgc
acgggcgattataatctgaatgcatcagtccctggttttattggagattatcattacgat
gttgttatgactataacctcaggttgtgacattgatatgggtgatcttgtatatgagcct
cccagagatggccctactttatgggaaataggcattccggatcgttctgctgcagagttt
tatgttcccgaccctaatccaaagtacattaacaaactcttcgtcaatcatcctgacagg
tttaggcagtatggactgtgggaaagatactcagagttatattctgatcaagacttggtt
tataccgttggtgtcagtgactacagcaaagactggttctttgctcaggttaccaggaaa
aatgaagacaataaatatcaaggaactacttggcaaattaaattcaatcttgacaattta
gaccaaactggttcctacaagctgagagtagcgcttgcttctgcaactttttctgaattg
caggttcgggtgaatgatccaaaggcaaatcgccctctattcacgagcgggatgataggg
agagataactcaatagcaaggcatggaatccacgggctttattggctttacaatgtggac
gtaccaagctctcggcttgtcgagggagacaatataatctatttgacgcaaccaagaagc
acaggccctttccagggcattatgtatgattatcttcgctttgaaggtcccccatctcca
agctccaaatga
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