Malus sylvestris (European crab apple): 126603951
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Entry
126603951 CDS
T09027
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03022
Basal transcription factors
msyl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
126603951
09124 Replication and repair
03420 Nucleotide excision repair
126603951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msyl03021
]
126603951
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126603951
Transcription machinery [BR:
msyl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
126603951
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
126603951
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
126603951
NCBI-ProteinID:
XP_050126933
LinkDB
All DBs
Position
15:41525310..41529916
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AA seq
297 aa
AA seq
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MASAASKLYADDVSLLMVLLDTNPFFWSSSNLPFSKFLPHVLAFLNSILLLNQLNQVVVI
TTGYNSCSYIYDSSSDSNQGSDHGRIMPARCSNLLQKLEEFVIKDEQLFKEGSREGISSS
LLSGSLSMALCYIQRVFRSGPLHPQPRILCLQGSSDGPEQYVAIMNSIFSAQRSMVPIDS
CYMGSSNSAFLQQASYITGGVYLKPQQPNGLFQYLSTVFATDLHSRAFLQLPKSLGVDFR
ASCFCHKKTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQAQLDASSTSNRKRKTPET
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atggcttcggccgcttcgaagctctacgccgacgatgtgagccttctgatggttttgctg
gacacgaaccctttcttctggagctcatccaatctcccgttctccaagtttctcccccac
gtacttgcgtttctgaactcgattctgctgctcaatcaactcaaccaggtggtggttatt
accacggggtacaattcctgcagctacatctacgattcttcttcggactcgaaccagggc
tctgatcatggaagaataatgccggcgcggtgctctaacttgttgcagaagctggaggaa
ttcgtgatcaaagacgagcaattgttcaaagaagggtcgagagaagggatttcttcttct
ctgctatctgggtctttatcaatggctctttgttatatacagagggtttttcgatcaggg
ccacttcatcctcaacctcgcattttatgcttgcagggatcatcggatggacctgaacaa
tatgttgcaatcatgaattcaatattttctgcacagcgttctatggttcctatagattct
tgctatatgggatcgagcaactctgccttcctacagcaggcttcatatattactggtggt
gtgtatctgaagccccaacaaccaaatggactgtttcagtatctctcgacagtttttgca
actgatttgcattctcgagcatttttacagcttcctaagtctctcggtgtggattttcgt
gcctcgtgtttttgccataagaagacaatagacatgggctacatttgttctgtgtgcttg
tccattttttgtaagcatcacaagaaatgttcaacttgtgggtcagtatttggtcaagcc
cagttagatgcttcctcaacatccaacaggaaaagaaagacgccagagacataa
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