KEGG   Malus sylvestris (European crab apple): 126604488
Entry
126604488         CDS       T09027                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
msyl  Malus sylvestris (European crab apple)
Pathway
msyl03020  RNA polymerase
msyl03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:msyl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    126604488
  09124 Replication and repair
   03420 Nucleotide excision repair
    126604488
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:msyl03021]
    126604488
   03400 DNA repair and recombination proteins [BR:msyl03400]
    126604488
Transcription machinery [BR:msyl03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     126604488
DNA repair and recombination proteins [BR:msyl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      126604488
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 126604488
NCBI-ProteinID: XP_050127721
LinkDB
Position
15:35560194..35562095
AA seq 138 aa
MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQMSDDPRNQISQVFEKSLQ
YVKRFSRYKNPDAVKQVREILSRYQLTEFELCVLGNLCPETVEEAIAMVPSIKAKGRVHD
DDAIDKMLNDLALIKKFE
NT seq 417 nt   +upstreamnt  +downstreamnt
atgtctggggaagaggaagaaaacgccgccgagcttaaaatcggagacgagtttttgaag
gcaaagtgcttaatgaactgcgaagtttctttgattctggaacacaagttcgagcagctt
caacagatgtctgatgatcccaggaaccaaatttctcaagtatttgagaagtcactgcag
tatgtgaagcgcttcagccgttacaaaaatcccgacgctgttaaacaagttcgagaaatc
cttagtagatatcagctgactgagttcgagctctgtgttcttggcaatctctgccctgaa
actgttgaggaagctattgctatggtgccatctataaaggcaaaaggacgggttcacgac
gatgatgcaattgataaaatgttgaatgacctggcgctaatcaagaaatttgagtag

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