Malus sylvestris (European crab apple): 126604618
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Entry
126604618 CDS
T09027
Name
(RefSeq) WD repeat-containing protein ATCSA-1-like
KO
K10570
DNA excision repair protein ERCC-8
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03420
Nucleotide excision repair
msyl04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
126604618
09124 Replication and repair
03420 Nucleotide excision repair
126604618
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
msyl04121
]
126604618
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126604618
Ubiquitin system [BR:
msyl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
126604618
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
126604618
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_WDHD1_1st
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_EIPR1
NBCH_WD40
WDR90_beta-prop_4th
WD40_MABP1-WDR62_2nd
Beta-prop_SPT8
Beta-prop_Nup120_160
Beta-prop_WDR75_1st
WD_LRWD1
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
126604618
NCBI-ProteinID:
XP_050127864
LinkDB
All DBs
Position
15:4774109..4777989
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AA seq
449 aa
AA seq
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MWRQIGDREAGKLRPNSFSNRIKSTRIQTLQLSNHKDFISPHRGSVNTLQLDLTEARYLL
SGASDASAAVFDVQRGTDYGGGGAITRHKCLFVVDKQHEHGHKYAVSSAVWYPVDTGLFV
TGSYDHHINVWDTNTTQVVMDFKMPGKVYRTAMSPLATSHMLIAAGTEDVQVRLCDIASG
AFAHTLSGHRDGVMTVEWSTSSEWVLLTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP
PILERSATIKGSTVKPSSSSQSTSAKARAPQRKLSNGSGAKHSPIGKSPAKGSMKQRLHP
GMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRLRLWDVESGCNTLVNFETVRMQTS
RPIQLATSQNSELVFVPCMTAVKAFNMWSGKTSLKFRGHYEHVNCCWFSSQDQELYTGGN
DRQILVWSPPRLVSDEDEGPSKDEDNWSD
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgtggcggcaaatcggagacagagaagcgggcaagctccgcccaaattcgttctcgaat
cgaatcaagtccacccggatccaaacgctccaactctccaatcacaaagacttcatctcc
cctcatcgcggctccgtcaacactcttcagctggatttgacggaggcccggtacctgtta
tccggcgcctccgatgcttccgctgccgtgttcgatgtccagcgcgggaccgattacgga
ggcggcggagctatcacgaggcacaagtgcttgtttgtggtggataagcagcacgagcac
gggcataagtatgcggtgtcctccgccgtgtggtatccggtcgacaccggactgtttgtg
acgggttcgtacgatcatcacatcaatgtttgggatacgaatacgacgcaggtagtgatg
gacttcaagatgccggggaaggtgtaccggactgcaatgtccccgctggcaacttctcac
atgctcattgctgccggtaccgaagatgttcaagttcgcctctgtgatattgcttctggg
gcttttgctcacaccttgtctggccaccgcgatggtgtgatgactgtggagtggtctact
tctagcgagtgggtattgcttacaggtggatgtgatggtgcaatacgtttttgggacatt
agacgtgccggatgttttcgtgttttggatcaatctcagtctcagcttgggaggcgtcca
cccatcctggaacgctctgccacaattaagggttcaacagttaagccctcgtcatcaagt
caaagcacatctgcaaaagctcgggcaccacaaaggaaactttctaatgggagtggtgca
aagcactcacccattggtaaaagtccagcaaagggatctatgaagcaaagattacatcca
gggatgctgtctagtcaggatcgtgccactgcccattatggtgctgttactggattaaaa
gtcaccgaagacggcatgtacctcttgagtgcaggttccgattcaagattgaggttgtgg
gatgtagaatctggctgcaatactttggtgaactttgaaactgtgcgtatgcaaaccagc
aggcccatacagttagctacaagtcagaattcggagcttgtttttgttccctgcatgaca
gctgtgaaggcattcaatatgtggtcgggtaaaacatccctgaaatttcgcggtcactat
gaacatgtaaactgttgctggtttagttcacaggatcaggaattgtacactggtggcaat
gatagacaaattctagtttggtcgccgcccagattggtttctgatgaggatgaaggaccc
tctaaggacgaggataattggagcgactag
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