Malus sylvestris (European crab apple): 126605506
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Entry
126605506 CDS
T09027
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
126605506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msyl03021
]
126605506
03036 Chromosome and associated proteins [BR:
msyl03036
]
126605506
Transcription machinery [BR:
msyl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
126605506
Coactivators
SAGA/TFTC/STAGA complex
126605506
Chromosome and associated proteins [BR:
msyl03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
126605506
STAGA complex
126605506
TFTC complex
126605506
SAGA complex
126605506
SLIK complex
126605506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIID_NTD2
WD40
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_WDR3_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
NBCH_WD40
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
Beta-prop_WDR41
Beta-prop_VPS8
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_Aladin
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_Vps41
LisH_PAC1
Beta-prop_Nup120_160
Dimer_MINDY4_N
Tricorn_2nd
PALB2_WD40
LisH
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
126605506
NCBI-ProteinID:
XP_050128871
LinkDB
All DBs
Position
15:complement(2540515..2546026)
Genome browser
AA seq
621 aa
AA seq
DB search
MAEAVDEESVRKFVAAYLKKKGFKQTENAFQDELNKNTNSSSSPISFNSKSGSDVAKHIL
SFSQYEEGPAQYQDAYAKLRSWTYSSLDLYRHELLRVLYPVFIHCFMDLVAKGHNQEART
FFNSFREKHEMMHQRDLQKLEGVLSPSHLEEMEFAHSLRQSKVNIKICQYSYELLLQFLH
KSQSATVLGIINEHINFQVSPGQPSSISDDAEALTLTGSSLDSANQINQKEIHWGLLEDS
LEERSDKALDSERAEGESKEGDGDENKKKLSEGAKQGASNKKLKKDKAAGAAKSARPEAT
PVTAVPRVKPELTLPVISTEVEQSILEDLRNRVQLSNAALPSVSFYTFINTHNGLNCSSI
SHDGSMVAGGFSDSSLKVWDMAKIGQQGLDSALQVENGTTTSSEQVLSNGGKKPYTLFQG
RYKGHNYPVWDVQVLILPVLPMIEQQGYGLWTEFSHVDCVQWHVNCNYIATGSSDKTVRL
WDVQTGECVRIFIGHRSMVLSLAMSPDGRYTASGDEDGAIMMWDLSSGRCVTPLTGHTSC
VWTLDFSGEGSLLASGSADCTVKLWDVTASTKLPRTEENKSGNTSGMRSLKTLPTKSTPV
YSLRFSRRNLLFASGVLSKTV
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggccgaggcggtggacgaggagagcgtgcggaagttcgtggcggcttacttgaagaag
aaaggcttcaagcagaccgagaacgcttttcaagacgaactaaacaagaataccaacagc
tcttcgtccccgatttctttcaattccaaatcgggctccgacgtcgccaagcacatccta
tccttctctcaatatgaggaaggtccagcacagtaccaagatgcatatgccaagttgagg
tcgtggacttacagttcactagatttgtacaggcatgagttgcttcgtgttctctatcca
gtatttattcattgttttatggatctggttgctaaaggtcataatcaagaagctcggaca
tttttcaacagcttccgtgaaaaacatgaaatgatgcaccaacgagatctacagaagttg
gaaggcgttctttctccctctcatttggaggagatggaattcgctcattctcttaggcag
agcaaagtcaacataaagatatgccaatactcgtatgagcttctgctgcagtttctacac
aagtcacagtccgccacagtgcttgggattatcaatgagcatattaacttccaagtttct
cctggacaacccagttcaatttctgatgatgctgaggctctaacacttaccggaagtagc
ctggattcagctaatcagataaaccagaaggaaatacattgggggttgctcgaagattcc
ttggaagaacgctcggacaaggccttagactctgaaagggcagaaggagaaagcaaagaa
ggggacggggatgagaataagaaaaaattaagtgaaggagctaaacagggggcttcgaac
aaaaagttgaaaaaggacaaggctgctggtgcagcgaaaagcgcacgccctgaggcaacc
cctgtaactgcagtaccaagagtcaaaccagagcttactttgccagtaatttccacagag
gttgaacagtctattcttgaagacttgagaaaccgtgtgcaattgagtaatgctgcactg
ccatctgtcagcttttatacattcatcaacacgcacaatggtttaaactgttcgtctata
tcccatgatggatccatggttgctgggggattttcagactcgtcgctgaaggtatgggat
atggcaaagattgggcaacaaggccttgattcagctttgcaggttgagaatggtaccacc
acttcaagtgagcaagttctgtcaaatggtgggaaaaaaccatatactttgtttcagggt
cgctacaagggtcataattacccagtatgggatgttcaggtccttattttgccagtgctt
cccatgatcgaacagcaaggatatggtctatggacagaattcagccatgttgattgtgtg
caatggcatgtcaactgcaactacattgccactggttcgagtgacaaaacagttcgattg
tgggatgtacagactggagagtgtgtccgaatatttattggtcacaggagtatggttttg
tctctggcaatgtcacctgatggccgttacacggcttctggtgatgaagatggagcaatc
atgatgtgggacctttcaagtggccgctgtgttacacctttgacgggtcacacctcatgc
gtatggacacttgatttcagtggtgagggttcgcttcttgcttctggatctgccgattgc
actgtaaaactatgggacgtaactgcaagtacaaagttgccaagaactgaagaaaacaaa
agcggaaataccagcggaatgagatcattgaagactttgccgacgaagtctactcctgtc
tattcgttacggttttctcgaagaaaccttctatttgcttccggggttctctcaaaaact
gtataa
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