KEGG   Malus sylvestris (European crab apple): 126606356
Entry
126606356         CDS       T09027                                 
Name
(RefSeq) WD repeat-containing protein VIP3-like
  KO
K12602  WD repeat-containing protein 61
Organism
msyl  Malus sylvestris (European crab apple)
Pathway
msyl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:msyl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    126606356
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msyl03019]
    126606356
Messenger RNA biogenesis [BR:msyl03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     126606356
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_IFT122_1st Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_Gbeta Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WDR55 ANAPC4_WD40 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd Beta-prop_EML Beta-prop_NOL10_N WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_Aladin DSE1_N NBCH_WD40 Beta-prop_TEP1_C Beta-prop_DCAF12 Beta-prop_Vps41 Beta-prop_VPS8 WDR90_beta-prop_4th WD40_RFWD3 eIF2A Beta-prop_SPT8 Cytochrom_D1 Beta-prop_HPS5 Beta-prop_WDR35_TULP_N Ge1_WD40 Beta-prop_IFT140_1st Beta-prop_SCAP CFAP43_N Beta-prop_NUP159_NUP214 TRM82_WD Beta-prop_WDR11_1st CFAP251_N Tricorn_2nd Beta-prop_WDR75_2nd Beta-prop_WDR41 Beta-prop_ACSF4 DUF5711 PD40 PEP5_VPS11_N WDR54 ASA1 Beta-prop_LRRK2 Beta-prop_MIP2
Other DBs
NCBI-GeneID: 126606356
NCBI-ProteinID: XP_050129685
LinkDB
Position
2:6266754..6268997
AA seq 317 aa
MKLAGLKSIDDAHDESVWAVTWVPATDSRPALLLTGSLDETVRLWQPDELVNRGKMTGHC
LGVASVAAHPSGRIAASASLDSFVRIFDVDTNNTVASLEAPPSEVWQLRFNPQGTMLAVA
GGGSASVKVWDTATWDIVATLSIPRPEGTKPTDKSSSKKFVLSVAWSPDGRRIACGSMDG
TVSVFDTDRAKFLHHLEGHFMPVRSLVFSPVEPRLLFTGSDDAHVHMYDAEGKTLVGAMS
GHAGWVLSVDVSSDGAAVATGSSDRTVRLWDISMRGAVQTMSNHTDQVWGVAFRPGGMPG
RLASVSDDKSISLYDYS
NT seq 954 nt   +upstreamnt  +downstreamnt
atgaagctcgccggactgaaatcaatcgacgacgcgcacgacgagtcggtatgggcggtg
acgtgggtcccggccaccgattcccgacctgctttgctgctaaccgggtcgctggacgag
accgtgaggctgtggcaaccggatgagctggttaaccggggtaaaatgaccggccactgt
ctcggcgtggcctcggtggcggctcacccctccggccgcatcgccgcctcggcctcgctc
gatagcttcgtgaggatctttgatgttgacaccaacaacaccgtggccagtctcgaagcc
ccgccgtctgaagtgtggcaattacgattcaatccccagggtaccatgctagctgtggca
ggtgggggaagtgcatccgtcaaagtttgggacactgccacatgggatatagtagccaca
ttgtcgattcctcgccccgaaggaaccaagccaactgacaaaagcagcagcaagaagttt
gtgctatcggttgcctggagtcctgatgggagacgcattgcttgtgggtcgatggatgga
actgtttctgtttttgatacagatcgcgccaagttcctgcaccacctggaaggccacttc
atgccagtgaggtctctcgtgttttctcccgttgagccccggttgctcttcacaggctcg
gatgatgcccatgtgcacatgtatgatgctgagggtaaaaccttggtcggggctatgtca
ggtcacgcaggctgggtcctgagtgtggatgtgagtagtgatggggcggctgttgcaacg
ggctcgagtgatagaactgtgaggctgtgggatatcagcatgaggggagctgtgcagaca
atgagcaaccacactgaccaagtctggggagtggcgtttcgaccaggaggaatgcccggt
agacttgctagcgtgtccgatgacaagagtatatcgctgtacgactactcgtga

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