Malus sylvestris (European crab apple): 126606494
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Entry
126606494 CDS
T09027
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126606494
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msyl03041
]
126606494
Spliceosome [BR:
msyl03041
]
Complex B
Other components
Prp19-related factors
126606494
Complex C
126606494
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH_3
RRM_occluded
RRM_YTH1
zf-CCCH
zf-CCCH_10
zf-CCCH_4
RRM_3
zf-CCCH_PARP12
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
126606494
NCBI-ProteinID:
XP_050129838
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All DBs
Position
16:506832..509444
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AA seq
464 aa
AA seq
DB search
MAHRLLRNPEADGWERSDFPIICESCLGDNPYIRMTRAEYDKECKICSRPFTVFRWRPGR
DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDSALAIDSNDSIPRSDVNREFFAE
EHDRRARAGIDYESSYGKVRPNDTILKLQRTEPYYKRNRAHVCSFYIRGECTRGAECPYR
HEMPVTGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPTLEPPEDESIRTLYVGGIDARIS
EQDLRDHFYAHGEIESIRMVLQKACAFVTYTTREGAEKAAEELYSKLVVKGLRLKLLWGR
PQAPKEEPEGANGATQQALAHGGLLPRAVISQQHNQLQQDQYAPVHLYNIPPPPSQERTF
YPSMDPQRMGALIPSQDRIPSVSAGLGEKNANFDRQQHYTFQTAAPPQGQYHQQFYPPPY
GYMPAPPQPYSQDHDAVPPPPSLPMDQQHQHSATPSESGSTVET
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atggctcataggctgctgagaaatccggaggcggacggttgggaacgatcggactttccc
atcatctgcgaatcatgcctcggcgacaacccctatatccggatgacaagagccgaatac
gacaaggagtgcaagatttgcagccgtcctttcacggtgtttcggtggaggcccggccgc
gacgcccggtacaagaagacggagatttgccagacttgctgcaagttgaaaaacgtctgc
caagtctgcctcttggatctcgaatacggcttgccggttcaggttcgagactccgctctc
gccattgattccaacgattccatccctagaagcgacgtcaatcgcgagttcttcgccgag
gagcacgatcgaagggctagggctggcatagattacgagtcttcgtacgggaaggtgcgg
ccgaacgacacaattctgaagcttcaaaggacggagccgtattacaagaggaaccgagct
catgtctgcagtttctacattcggggtgagtgcacgagaggtgccgagtgcccttaccgg
cacgagatgccagttaccggggaattgtcacaacagaacatcaaagaccgttattacgga
gtcaatgatccagtggcaatgaagctgcttaacaaggctggagagatgcccaccctggaa
ccaccagaggatgagagcattagaacgctatatgtgggcgggattgatgcgagaatatct
gagcaggatttgagggatcatttttacgctcatggtgaaatagaatccataaggatggtg
ctccaaaaagcatgcgcgtttgtaacatacacgacgagagaaggcgcagaaaaggcggct
gaagaactctatagtaaactggtagtgaagggtttgagattgaagttactctggggaagg
ccccaagcaccaaaagaggaacctgagggcgcaaatggagctacgcagcaggcgttagct
catggtggattgttgcctcgagcagtcatatcccaacagcacaaccaattacaacaggac
caatatgctccagtgcacttgtacaacatcccacctccaccctcccaggagagaacattt
tatccttcgatggatcctcaaaggatgggtgccctcatcccgtcccaggacaggatcccc
agtgtgtctgcggggttgggcgagaagaatgccaatttcgataggcagcagcattataca
tttcaaactgcggctccaccgcaaggtcaatatcatcagcaattttatcctcctccgtat
gggtatatgccggctccaccacaaccttactcgcaggatcatgatgcagtgcctccgcca
ccatcgttaccaatggaccaacagcaccagcattctgcaacaccatctgagtctggttca
actgttgaaacctaa
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