Malus sylvestris (European crab apple): 126606528
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Entry
126606528 CDS
T09027
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126606528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126606528
03041 Spliceosome [BR:
msyl03041
]
126606528
03009 Ribosome biogenesis [BR:
msyl03009
]
126606528
03016 Transfer RNA biogenesis [BR:
msyl03016
]
126606528
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126606528
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
126606528
Spliceosome [BR:
msyl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
126606528
Complex C
U4/U6.U5 tri-SnRNP related factors
126606528
Ribosome biogenesis [BR:
msyl03009
]
Eukaryotic type
Pre-60S particles
Helicases
126606528
Transfer RNA biogenesis [BR:
msyl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
126606528
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
126606528
NCBI-ProteinID:
XP_050129868
LinkDB
All DBs
Position
16:complement(24006803..24029473)
Genome browser
AA seq
987 aa
AA seq
DB search
MEESPTPAKRKEREASEITETPTDESSLKRRHLTRTCVHEVAVPSDYASTKDESVYGTLS
NPVYNGEAAKKYQFTLDPFQQISVACLERKESVLVSAHTSAGKTAVAEYAIAMAFRDKQR
VIYTSPLKALSNQKYRELSQEFEDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLK
EVAWVIFDEIHYMKDRERGVVWEESIIFMPPAVKMVFLSATMSNATEFAEWICNLHKQPC
HVVYTDFRPTPLQHYVFPVGGNGLYLVVDENEQFREENFVKLHDTFSKQKLSDGHRNNKA
SGRLAKGGTASGGSDIFKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNSQDEKD
AVEQVFRNAILCLNEEDRELPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGLVKA
LFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGICIIM
IDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLLSRAEGQFTAEHVIKNSFHQFQYEK
ALPGIGEKVSKLEQEAALLDASGEAEVAEYHKIKLDIAQLEKKMMSEITRPERVLYFLLP
GRLVKIREGGTDWGWGVVVNVVKKPSSGLGTLSSRGGGYIVDTLLHCSPGSSENSSQPKP
CPPRPGEKGEMHVVPVQLPLISALSKLRISIPSDLRPLEARQSILLAVQELGTRFPQGLP
KLNPVKDMGIEDPEIVELVNQIEDLEQKLYAHPLHKSQDVNQIKCFQRKAEVDHEIQQLK
SKMRESQLQKFRDELKNRSRVLKKLGHIDAEGVVQLKGRAACLIDTGDELLVTELMFNGT
FNDLDHHQIAAIASCFIPVDKSNEQIQLRTELARPLQQLQESARRIAEIQHECKLDVNIE
EYVESTVRPFLMDVIYCWSKGASFAEVTQMTDIFEGSIIRAARRLDEFLNQLRTAAQAVG
EVALEEKFTGASESLRRGIMFANSLYL
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatctccaacacctgcgaaacgaaaagaacgtgaagcgtcagagatcacagag
actcccaccgacgaatcttccctgaagcgacggcatttgactcgaacatgtgtgcatgag
gttgcagttcccagtgactatgcttcgaccaaggatgagtcggtttatggaaccctttcg
aatcctgtttataatggcgaggcggccaagaaataccaatttacccttgacccatttcag
cagatttctgtggcatgcttagaacggaaagagtcagttttggtctccgcccatacttca
gcaggtaagactgcagtcgcggagtatgcaattgccatggcttttagggacaagcagagg
gttatatatacttcgccattgaaggctttgagcaatcagaaatatagagagctcagccag
gagtttgaagatgttggattgatgactggagatgttacactctcacctaatgctagttgt
ttggttatgacaactgagatccttaggggaatgctttacagaggttccgaggttttaaag
gaagttgcctgggttatcttcgatgaaattcactacatgaaggatcgtgaaagaggggtt
gtttgggaagagagtattatatttatgcctcccgctgttaaaatggtttttctttcagcc
acaatgtcgaatgcgactgagtttgcagagtggatttgtaatttgcacaaacagccttgt
catgtggtgtacacagattttcgaccaactcctctgcagcattacgtttttccagtgggt
gggaacgggttgtatcttgtggtcgatgagaatgaacaattcagggaggaaaattttgtg
aagctacatgatactttctcaaagcagaaattgagtgatggtcacaggaataacaaggca
agtgggagacttgcaaaaggtgggactgcatctgggggttctgacatattcaaaattgtg
aagatgattatggaacggaaatttcagccagttataattttcagcttcagtagaagagag
tgtgaacaacatgctatgtccatgtctaagcttgattttaacagccaagatgaaaaagat
gctgttgaacaggtttttcgtaatgcaatactctgcttaaatgaggaagacagggagttg
cctgctattgagttaatgctgccactccttcaacgaggaattgcggttcatcattctggc
cttctacctgttatcaaggaactggtagaacttcttttccaagaaggccttgtaaaagcc
ctttttgctactgagacatttgcaatgggcttaaacatgccagcaaaaactgtagttttc
acagctgttaagaagtgggatggtgatagtcatcgatatatcggatctggtgagtatatt
cagatgagtggaagggctgggcgtcgtggcaaagatgagcggggtatttgtatcataatg
attgatgaacagatggaaatgaacacactaaaggatatggttttgggtaaaccagctcct
ctagttagcactttcagactcagctattactcaattttgaatttgttgagccgtgcggaa
ggccaattcacagctgaacacgtgataaagaattcattccaccaatttcagtatgaaaag
gctttgcctggtataggggaaaaggtttccaagcttgagcaggaagcggctttgcttgat
gcatcaggagaggctgaagttgctgagtatcataagataaaacttgatatagctcaactt
gagaagaaaatgatgtcagagataacgaggcctgaaagagttctgtattttcttcttcct
ggtcgcctggtcaagattagggaaggtggtacagattggggctggggagttgtagttaat
gtggtaaaaaagccttcatccgggttaggcacactgtcctcacgcggtggtgggtatata
gtggatactttgctccactgttctcctggttcaagtgagaacagttcacagccaaagcct
tgccctcctcgccctggagaaaagggtgaaatgcatgtagtccctgtacaattgcccctg
atttctgctctaagcaaactcagaatatctattccctctgatttgcggccgttagaggcg
aggcaaagtattcttctagcagttcaggagctgggaactcgattcccacaaggtcttcca
aagctgaatcctgtaaaggatatgggcattgaagatcctgaaattgttgagttagtcaat
caaatagaggatcttgaacagaaattatatgcacatccactgcataagtctcaagatgtg
aatcagattaaatgctttcaaaggaaagcagaggtggatcatgaaattcaacaacttaag
tccaaaatgcgtgagtcccagcttcaaaaatttcgtgatgaacttaagaaccgttcacgg
gttttgaagaagcttggtcacattgatgccgagggtgttgtccagttgaaggggcgggca
gcctgcttgatagacacaggagatgagctccttgttactgaactgatgtttaatggtaca
ttcaacgatttggatcatcatcaaattgcggcaatcgcaagttgttttattccagtagat
aaatcaaatgagcagatacaattgaggacggagcttgctagaccattacaacaactccaa
gagagtgctagaagaatagcagagatacaacatgaatgcaaattagatgtaaacattgaa
gaatacgtggaatcaacagtgcgaccgttcttgatggatgtgatttattgttggtcaaag
ggtgcaagtttcgcggaggttacacaaatgacagatatatttgagggtagtatcatcaga
gctgctagaagactagatgaatttttgaaccagttgcgtactgctgctcaggctgtggga
gaagttgctttggaagagaaattcactggagcaagcgaaagcctccggcgaggtatcatg
tttgcaaattccctgtatctgtag
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