Malus sylvestris (European crab apple): 126606558
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Entry
126606558 CDS
T09027
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03030
DNA replication
msyl03420
Nucleotide excision repair
msyl03430
Mismatch repair
msyl03440
Homologous recombination
msyl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
126606558
03420 Nucleotide excision repair
126606558
03430 Mismatch repair
126606558
03440 Homologous recombination
126606558
03460 Fanconi anemia pathway
126606558
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msyl03000
]
126606558
03032 DNA replication proteins [BR:
msyl03032
]
126606558
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126606558
Transcription factors [BR:
msyl03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
126606558
DNA replication proteins [BR:
msyl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
126606558
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
126606558
MMR (mismatch excision repair)
126606558
DSBR (double strand breaks repair)
HR (homologous recombination)
126606558
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
OB_MEIOB_N
DUF936
Motif
Other DBs
NCBI-GeneID:
126606558
NCBI-ProteinID:
XP_050129917
LinkDB
All DBs
Position
2:complement(6379782..6382737)
Genome browser
AA seq
646 aa
AA seq
DB search
MPVNLTPNAIAAMIGGDVNLKPLVQVVDIKLIGTQERYRFMVSDGVSCQHAMISSQLNDR
IKTNRVQIGSVVQLTEYISTVLQNRQVIVVLNMETIILNSDVIGNPKPYGPPDSAAQNAL
RNGSVQRSAGNHMISQNPVHNVQNLRPTSHSERPSVRPRLHPQSSPHDGPNFRATVQPPY
QPPPHYKNHGPIMKNEAPARIIPINALNPYQGRWAIKARVTAKGDPRRYNNAKGDGKVFS
FDLLDSEGGEIRVTCFNAVLDRFYDIIEVGRVYLISKGSLKPAQKNFNHLKNDWEITLDA
SSTVDLCPDEDGSIPAQNFNFRPISEIENAESNSIVDVIGIVISVNPSVPIMRKNGMETQ
RRILNLKDRSDKSVEVTLWGDFCNREGQKLEEMLASGFSPVLAVKAGKINDFSGKSVGTI
HSTQLFINPDISDARTLRDWFDRGGKDTASVSISKDIVPGGTKNEIRKTVSQIRDEGLGR
SDKPDWVTVKGTISFIKTDSFCYTACPLMIGDRQCNKKVSRSGNSGWQCDRCNQEFEECD
YRYLLQAQIQDHTGLTWATAFQEAGEEILGCSAKALYLLKYEEQDESRFGDIVRSSIFNQ
FLFKLKIKEEMYGDEQRVKITVVKADKVNYSSESRYMLDMISKHSR
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgaacctgacgccgaacgccatcgcggcgatgataggcggcgacgtgaatttg
aagccgttggtgcaggtggtcgatattaagctcatcggcacgcaggagaggtaccgtttc
atggtctccgacggcgtttcgtgccagcatgccatgatctcttcgcagctcaacgaccga
atcaagaccaaccgagtccagataggctccgtcgtccagctcaccgagtacattagcacc
gtcctccagaaccgccaggttattgttgtgctgaacatggaaactatcatactgaactct
gacgtgattgggaatccaaaaccatatggtccacctgattcagctgctcaaaatgcgttg
cgtaatggcagtgttcagcgatcagctggtaatcatatgatttcgcaaaatcctgttcac
aatgtacagaatcttagacctacttctcattctgagaggccgagcgtcagacctcgtctt
catcctcaaagctctccacacgatgggccaaattttcgagctactgttcagcctccttac
caaccacctccacattacaaaaatcatggcccaatcatgaagaacgaggcaccagcacgg
attattcctattaatgctctgaatccttatcagggaagatgggccatcaaggcaagggtt
acagcaaagggggatccccgtcggtataataatgctaaaggagatggtaaagttttctct
tttgacctccttgactctgaaggaggggaaatacgagttacctgcttcaatgctgttctt
gaccgcttctatgatattattgaggttggcagagtttacttgatttcaaagggaagcttg
aaacctgcccagaagaatttcaaccatctgaagaatgactgggagataactttggatgca
agttcaaccgtggacctctgccctgatgaagatggttccataccagcgcaaaacttcaac
ttcaggccgattagtgaaattgaaaatgctgaaagtaattctattgttgatgttattggc
attgtgatatctgtcaatccttcagttcctatcatgaggaagaacggtatggaaactcag
agaagaattctgaatctaaaggaccggtcggacaagagcgttgaggtaaccctttggggg
gatttctgcaacagggaaggtcaaaagcttgaagagatgttggcttctgggttttcccca
gttttagccgttaaagctgggaagattaatgatttcagtggcaagtctgttggaacaatt
cattctacacagctatttataaacccagatatttctgatgctcgtaccttgagagactgg
tttgaccgagggggcaaggatactgcttcagtctccatttctaaagacattgttccagga
ggaactaagaatgagatacgcaaaactgtttctcagatcagggacgaaggtctcggaaga
tcagataagccagactgggtcactgtgaaggggacgatttcttttatcaaaacagattct
ttctgttacacagcttgtccgttgatgatcggggataggcagtgcaacaaaaaggtgtcg
aggtcaggaaacagtggatggcaatgtgacagatgcaatcaagaattcgaggagtgcgac
tacagatatctccttcaagcccaaattcaagaccacactggattgacttgggcgacagct
tttcaggaagccggggaagagatcttaggttgctcagcaaaggcgctgtacttgttgaag
tacgaagagcaggatgaatcaagatttggagacatagtccggagcagcatctttaatcag
tttctattcaagcttaaaatcaaagaggagatgtatggcgatgagcagagggtgaagatc
accgtggtgaaggcagataaggtgaactattcttcagaaagcagatacatgctcgatatg
atttcgaagcactctaggtaa
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