Malus sylvestris (European crab apple): 126607542
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Entry
126607542 CDS
T09027
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126607542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126607542
03012 Translation factors [BR:
msyl03012
]
126607542
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126607542
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
126607542
Translation factors [BR:
msyl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
126607542
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
NACHT
Dicer_dimer
TFIIA
nSTAND3
ATPase
AAA_19
T2SSE
ABC_tran
Motif
Other DBs
NCBI-GeneID:
126607542
NCBI-ProteinID:
XP_050131127
LinkDB
All DBs
Position
16:complement(2234128..2242673)
Genome browser
AA seq
1220 aa
AA seq
DB search
MPSVFLLLLPPSPPSLQFPCWPSPSHPKPIASSSKPSLLAMKDRPPSSYGSVYVPPHHRL
RSVISTPNYTSPASIGSKLRENQTAAAALNRRSSTNGALAYYQTQQQQQLQQQEQFQKPK
LQHTSAYDDSVSEEGSDREVEFPSHPTQSPYSSDIDEWKRKLTMLLRDKAKQELVTREKK
DRRDFDKIAALASKMGLYSHLYSKVAVFSKVPLPNYRFDLDDRRPQREVTLPLGLLRRVE
SYLGEFLSQKSRTKESFQDLSFSRSNSSGSIATDEGLFEQPESFASSKGVMEKLLWRRSM
QLRDKQQAWQESPEGRKMLELRRSLPAYKEKDALLAAISRDQVVIISGETGCGKTTQIPQ
FILESEIEAVRGAVCSIICTQPRRISAMSVSERVASERGEKLGDSVGYKVRLEGMKGRDT
RLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILM
SATLDSELFSSYFGRAQIIHVPGFTYPVRTHFLEDVLEITGCKLTPYNQIDDYGQEKMWK
MSKQAPRKRKSQIVSVVEDALKAADFKGYSPQTRESLACWNPDSIGFYLIEYLLCNICES
DKPGAILVFMTGWDDINSLKEKLHANPLLGDPSRVLLLACHGSMASTEQRLIFDEPGDGV
RKIVLATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAG
RVQPGECYHLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLNLGSISEFLSRALQSPEL
LAVQNAIEYLKIIGALDENENLTVLGRYLTLLPVEPKLGKMLLVGAIFNCLDPVLTIVSG
LSVRDPFLTPFDKKDLAEAAKSQFSRDNSDHLALVRAYEGWKVAERDFAGYDYCWKNFLS
AQSMKAIDSLRKEFLSLLRDTDLVDTNTTTHNAWSYDEHLIRAVICYGLYPGICSVVHNE
KSFSLKTMEDGQVLLYSNSVNARDSKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVLLLFG
GSFSKGDIDGHLKMLGGYLEFFMKPAIAEMYQCLKEELDELIQIKLLNPRMDTHSYHELL
SAVRLLLSEDQGEGRFVFGRQVLAPSKSKPSVVAAQPALVSRTESGPGGDNSKSQLQTLL
TRAGYNAPTYKTTQLKNSQFRATVEFNGMQIMGHPCNNKKSAEKDAAAEAIQWLVSGTQM
GHEYINHMSIMLKKSKKEHK
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgccctctgttttcctcctcctccttcccccatctcctccgtctctgcaattcccttgc
tggccgtcgccttcgcatccaaaacccattgcctcctcctccaaaccctcactcctggcg
atgaaggaccggcctccttcctcgtacggctccgtctatgtccctccccaccaccgcctc
cgctccgtcatcagcacccccaattatacctcccctgcttcaatcggctccaagctccgc
gaaaaccagactgctgctgctgctctcaaccggaggagcagcaccaatggtgctctggcg
tactaccagactcagcagcagcagcagctgcagcaacaggagcagtttcagaagcccaag
cttcagcacacttctgcttacgacgacagcgtttccgaggaaggctccgatcgcgaagtt
gagttcccgtcgcatccgacacagagtccttactcatctgatattgatgagtggaaacgg
aaattaaccatgctgttacgtgacaaggcgaagcaagagttggttacgagggagaaaaaa
gatagacgcgactttgataaaatagctgctttggcaagcaaaatggggctttatagccat
ctatattcgaaagttgcagtgtttagtaaggttccactgccaaactacagatttgacctg
gatgataggcgccctcagagagaggtgaccttgcctcttgggttgctgaggagagttgag
agctatcttggagagttcctttcccagaagtctaggacaaaggaaagctttcaagatctt
tccttttctagatcaaacagtagtggcagcattgctactgacgaagggctttttgagcaa
ccagaatcatttgcgtcgagtaagggtgtgatggaaaaacttctttggcggagaagtatg
cagctgcgtgataagcaacaagcttggcaggaatctcctgaaggtagaaaaatgcttgaa
cttcgcagaagtcttcctgcttataaagagaaggatgcattattggcagcaatttcacgg
gatcaggttgttatcatatcaggtgaaactggctgtggcaagactactcaaattccacag
ttcattttagaatctgagatagaagctgttcgtggagctgtttgtagtattatatgtaca
cagcctagacgaatatctgctatgtctgtttctgaaagagttgcttcagagagaggagag
aaattgggtgactcggttgggtataaggttcggttagaaggtatgaagggaagggacact
cgccttctcttttgcaccactggcattttgttgagaagattactagttgatagaaatttg
aaaggtgtaactcatgtgattgtggatgaaattcatgaacgtggaatgaatgaagatttt
ctgcttattgttctcaaggatctccttcctcggcgaccagaactgaggttgattttgatg
agtgcaaccctagattctgaacttttctcatcctactttggtagggctcagataattcat
gttccaggttttacatatccagttcggactcattttctggaggatgttctggaaattacg
ggatgcaaattaactccatacaatcagattgatgattatggccaagaaaagatgtggaaa
atgagcaaacaggcaccaagaaagaggaaaagccaaattgtttctgttgttgaggatgca
cttaaagcagccgattttaaggggtatagtccacagactcgggagtctctagcatgttgg
aatcctgatagtatcggtttttatctgattgagtatctcttgtgcaatatctgtgaaagt
gacaagcctggtgccattctagtttttatgactgggtgggatgacatcaattctctgaag
gaaaagttacatgccaatcctctattaggcgatccaagccgagtcttgttactagcatgc
catggttctatggcaagtactgagcagaggctaatatttgatgagcctggggatggagtg
aggaaaatagtgctggctactaatattgctgagacgagtatcacaatcaatgatgttgtt
tttgtacttgattgtggaaaggcaaaagagacttcatatgacgcactgaacaatactcct
tgtttgcttccttcctggatttccaaggtttctgctcaacaaagaagaggaagagcagga
cgtgtccagccaggggaatgttatcatctctatcctagatgtgtctatgatgcatttgca
gagtatcaattgccagagattttgaggacacctctgcagtctctctgtctgcaaataaaa
agtttaaacctcggaagcatttctgagttcttatctagggctctgcagtcaccagaatta
ctcgcggtgcaaaacgccatagagtatttaaagatcattggggccttggatgagaatgag
aatctgactgttttaggacgctatctaactctgcttcctgttgagccaaaacttggaaag
atgctcttggtaggtgccatcttcaactgcctggatccagttttgactattgtttctggc
cttagtgtcagagatcctttccttacaccatttgacaagaaagatcttgctgaggctgca
aaatctcagttctcccgggacaatagtgatcaccttgcacttgtgcgggcctacgagggc
tggaaggttgctgaaagagactttgctggatatgattattgctggaagaattttctttca
gcacaatcgatgaaagctattgattcccttaggaaggagttcctctctttgcttagggat
actgatcttgttgataccaacaccaccactcataatgcatggagttatgatgagcatctc
atccgtgcagttatttgctatggcctgtatcctggaatctgctctgttgtgcacaatgag
aagtcattttcgctgaaaaccatggaggatggccaggtgctgctatactcgaactctgtc
aatgctagggattctaaaattccatatccatggctggttttcaatgagaagataaaggtg
aactctgttttcctacgggattcaacagctgtgtctgactcagtgctcctcctatttggt
ggaagtttttcgaaaggggatattgatggacacttgaaaatgctgggaggatatttggaa
ttcttcatgaaacctgctatagcagaaatgtatcaatgcttaaaagaggaacttgatgag
ttaattcaaatcaaactactgaaccccaggatggacacacacagttatcatgaactcctt
tctgcagtgcggttgctgctctccgaggatcaaggtgaaggtagatttgtatttggccgc
caggtccttgcaccctcaaagtcaaagccatctgtggtggcagcacagccagccttggtt
tcaagaactgaaagtggacccgggggtgacaattccaagagtcagctccagacgttgctc
acacgagcaggatataatgcacccacgtacaaaaccacgcagctgaagaacagccagttc
cgagctacagtggagtttaacggaatgcaaattatgggccacccgtgtaacaacaagaag
agtgcagaaaaagatgcggcagcagaggccattcagtggctggtgagtggaacacaaatg
ggccatgagtacatcaatcatatgtcaatcatgttgaagaaaagcaaaaaggagcacaaa
taa
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