Malus sylvestris (European crab apple): 126607596
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Entry
126607596 CDS
T09027
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126607596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msyl03041
]
126607596
03009 Ribosome biogenesis [BR:
msyl03009
]
126607596
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126607596
Spliceosome [BR:
msyl03041
]
Complex A
U1 snRNP components
U1 related factors
126607596
Complex B
126607596
Ribosome biogenesis [BR:
msyl03009
]
Eukaryotic type
Pre-60S particles
Helicases
126607596
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
Transformer
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
126607596
NCBI-ProteinID:
XP_050131211
LinkDB
All DBs
Position
16:10483505..10490132
Genome browser
AA seq
1164 aa
AA seq
DB search
MATEEPAGPRYAPDDPTLPNPWKGLIDGSTGLLYYWNPETNVTQYEKPASLPPPLPSGPP
PATATPKLAAIPVAHSVQPKGVMPQDGQQITQAPQQHGSQVSQFSQQHGHLMAQQMNPTS
YAQQQGSQMAQPGHQQSSLLGQAMQQHGQMMQHPGQQMPQPQVHQGQQMPQQLGQHTPQG
HASQGQQRLQQLGQHTPQSHGSQMHPFAHQQMHYRPYQQSIPPQGQQSPQPQTLHSAQAQ
PLANQQEYKAAFPQREEDDFQQRNQIGVSPSRFQQAGASSVQNLPTGTNPVQMPQRSVHQ
GPTQQFGGPLGNMQHPSSFGHLQQPGADLAHHQHGSRFQSQMDPAMIHGQQSNVPPVGLR
MGHENNFHGRGGNDYYFNSNNEGTTGPQQPKLASIPIAKSQQEMSGGPPFQNATPGHSNA
LNTMPGHSMHNVYSHATGAPPFPNNSLVKPPYVRPTSLTSLSPVEVYRQQHEVTASGDNV
PAPFMTFEDTGFPPEILREIHAAGFASPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYL
MPAFILLRQRHNNSQNGPTVLVLAPTRELATQIQDEVLKFGRASRVSCTCLYGGALKGPQ
LKELDRGADIVVATPGRLNDILEMKKIDFQQVSLLVLDEADRMLDMGFEPQIRKIVDQIP
PNRQTLMYTATWPKEVRKIASDLLVNPVQVNIGSVNELAANKSITQYVEVVPQMEKQRRL
EQILRSQEQGSKIIVFCSTKRLCDQIARSIGRTFGAAAIHGDKSQGERDWVLNQFRSGKS
PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVSYTFFSEQDWKY
AADLIKVLEGANQQVPPEVREIALRGGPGFGKDRNPMNRFDSGGPVNGAAGRWDSGGRDG
IRDGGFGGRGSMRDGGFGGRGGFGGRGGMRDGNFGGRGSMRDGNFGGRGGPRDGAGSGRG
GRGDFFSGPGNRGRGFGGPGGGNVGRGRNGSGPQDRFNSMDGRGGRGRGRFDNRVDFPDR
SRGRNYSRSPDRVRTWDINRSRSRSRSRSISRSRSRSWTRSRSRSRSWSRGRSRSYSHSR
SHSRNRSRSPSYERYERPPRVSKFDMKDPVPESVVPPVPEMVPTSPETQVNVYPDTKPKL
PVVEQTGLVDTQGGGGDPSHHSLI
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagaggagccggctggtccacggtatgcgccagatgatcctacactgcctaat
ccgtggaagggtttgattgatggtagcacgggtttgttatactactggaatcctgaaact
aacgttacccagtatgaaaaaccggcttctttgcctccgcccttgccatcaggcccgcct
cctgctactgccacaccaaagctggctgcaattcctgttgctcattcagtgcaaccgaag
ggagtgatgcctcaggatggacagcagataacgcaagctccacaacagcacgggtcgcaa
gtgagccagttttctcaacagcatggacatctaatggcacaacagatgaatccgacatca
tatgctcaacagcagggctcacaaatggctcaacctggacatcaacagagttcactattg
ggacaggccatgcaacagcatgggcaaatgatgcagcatccgggtcagcaaatgccccag
ccgcaagtgcatcaagggcagcaaatgcctcagcaactgggacaacacacaccacagggt
catgcgtcacaagggcagcaaaggcttcaacaactgggacaacacacaccacagagtcat
gggtcacaaatgcatccgtttgcacatcagcagatgcattataggccttatcagcaaagc
attcctccccaagggcaacagagtccacaaccgcaaactctgcatagtgcacaagcgcaa
ccactggcaaatcaacaagaatataaagctgcattcccccagagggaggaagatgatttt
caacaaagaaatcaaattggtgtttctccatcccggtttcaacaagcgggagcctcatct
gtgcagaatcttcctactgggaccaatccagtacaaatgccacagaggtctgttcatcaa
ggcccaacccaacaatttggcggccccttgggaaacatgcaacatccttcctcttttggt
cacttgcagcaaccaggggctgatttggctcaccatcaacatggttctaggttccaaagt
caaatggacccagcaatgatacacggtcagcagtcaaatgtgcctcctgttggattaaga
atgggtcatgaaaataatttccatggtcgaggtggaaatgactattacttcaatagtaac
aatgaagggacgacaggtcctcagcagcccaagcttgcatctattccgattgctaaaagc
cagcaggagatgagtggtggccctccatttcaaaatgctacacctggtcattccaacgcc
ctgaatacaatgccaggtcattccatgcataacgtgtacagtcatgcaacaggtgctcca
ccattcccaaataactctttggtgaagcccccttatgtcagacctacaagtcttactagt
ctctcacctgttgaagtttatcgtcaacaacatgaagttactgcatcgggtgacaatgta
cctgcaccattcatgacatttgaagacactggttttcctccagagatattgagagagatt
catgctgctggcttcgcatctcccacgccaattcaggcacaaacatggccaattgctctt
caaagtagggatatagttgcaattgcaaaaactggttccggaaaaactttgggctatttg
atgcctgcattcattcttcttagacaacgccataataattctcagaatggcccaacagtc
ctggttttggccccaacacgggagcttgcaacacagatacaagatgaggttttgaaattt
gggcgagcttctagggtatcttgcacgtgcctgtatggtggagctctgaagggccctcag
ctaaaagagttagatcgtggagcagacatagtggtggcaactcctggtcgtcttaatgac
atactggaaatgaagaaaattgattttcagcaagtttctctacttgtacttgatgaagca
gatcgaatgcttgacatgggttttgaacctcaaatccgtaaaatcgtggatcaaataccc
ccgaacagacaaactcttatgtacacagcaacatggcccaaagaagtaagaaagatagca
agtgatcttcttgttaatcctgtacaagtgaatattggcagcgttaatgagcttgctgca
aacaagtctatcacacagtacgttgaagttgtcccacaaatggagaagcaaaggcgtttg
gagcagatcctgagatcccaagaacaaggttctaagatcattgtcttttgttccaccaag
aggttgtgtgatcagattgcacgtagtattggacgcacttttggggctgctgcaattcac
ggggacaagtctcaaggtgagcgagactgggttttaaatcagttccggagtggaaaatcc
ccggtattagttgccactgacgttgctgctcgtgggcttgacatcaaagatataagggtg
gtggtaaactatgatttccctactggtgttgaagactatgttcaccgaattggaagaact
gggagggctggcgcaacgggggtgtcatacacctttttctctgagcaagactggaaatat
gcagctgatttgattaaagttctggagggagctaaccagcaagtgcctccagaggtgcga
gagattgctctacgtggtgggcctggttttggcaaggataggaatccaatgaaccgtttt
gattctggtgggcctgttaatggtgctgctggccgttgggattccggtggccgtgatgga
attagggatgggggttttggtggtcgtggcagtatgagggatgggggctttggaggtcgt
ggtggttttggtggtcgtggcggcatgcgagatggcaactttggcggtcgtggcagcatg
cgagatggcaactttggcggtcgtgggggccctagggacggtgctggtagcggccgtggt
gggagaggcgatttcttttctgggcctggaaacagggggcgaggatttggtggtcctggt
ggtggtaatgttggtcggggtagaaatggcagtggcccacaagatcggttcaacagtatg
gatggccgtgggggacgtggacggggacgatttgataatagagttgattttcctgacagg
agcagaggcaggaactatagccgtagccctgacagagttcgaacatgggatattaacaga
agcagaagccggagtcgaagccgcagcattagccggagtaggagtcggagctggaccagg
agtcggagtcgtagccggagctggtcccgtggccgtagccgcagctacagccatagccga
agtcatagtcgcaaccgtagtcggagccccagttatgaaagatatgagaggccgccacgc
gtgtcaaaatttgatatgaaggatcctgttcccgaatctgtggttccacctgtaccagag
atggttcctacgtccccagagacacaagtcaatgtatatccagacaccaagccgaaactg
ccagtggttgagcaaacggggctagtggatacacagggcggaggaggagacccttcccat
cactcattgatttaa
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integrated database retrieval system
