Malus sylvestris (European crab apple): 126608067
Help
Entry
126608067 CDS
T09027
Name
(RefSeq) SAC3 family protein B-like isoform X1
KO
K23719
nuclear mRNA export protein SAC3
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126608067
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX-2 complex
126608067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAC3_GANP
MCM3AP_GANP
INT10
Motif
Other DBs
NCBI-GeneID:
126608067
NCBI-ProteinID:
XP_050131785
LinkDB
All DBs
Position
16:14585247..14595948
Genome browser
AA seq
1686 aa
AA seq
DB search
MYPGFSKASGPTGPPGSRPLFGNFGSGRPPSPSPPTNPPFSDAAPLRSPSRGPEALGPLA
FERVRSAASHPYPFEGVHRGPEAPGQLYSPPLGFGRVRPAASQPYPSAGVHRGPEAPGQL
HSPHLTFERARPAASHSYPSAGVHRSTDSHPTWDGGQQSSFKNYDTQAHQRTSAVTSFVV
SRNSGTSVTAKVSRFQDTEEIRSPPFLSKDVNFRNSTQGVPRSHLVTPRIRSPPLVSYED
LHPSVGVEDRLVSPRIRSPPLVSYEDLHPAVGIEEHALPSSEVDSRRELLDHTELRAPQE
PSLVSPFDGSYGTGRNFPLKHDNGQVPKRTRPSVSPVGFNSRSNTSFSTPDSRVHKKPLQ
SASNTISEAAARNLTSVPVAKRTRSPPLLPEDQVFHGNSYATQDGTEREMQAKAKRLARF
KVELSKTPQNNPDIVEPGVSANRHEQSNVEGNKLAAYKSTKLATDGTDGNALPEDEGVES
SGIIIGLCPDMCPESERAERERKGDLDQYERLDGDRNQTSMSLAVKKYNRTAERDANLIR
PMPILQRTIDYLLNLLDKPYNDRFLSIYNFLWDRMRAIRMDLRMQHIFNQEAITILEQMI
RLHIIVMHELCEYSRGEGFSEGFDAHLNIEQMNKTSVELFQLYDDHRKKGINIPMEKEFR
GYYALLKLDKHPGYMVEPAELSLDLAKMTPEIRQTSEVLFARDVARACRTGNFIAFFRLA
RKASYLQACLMHAHFSKLRTQALASIHAGLQNNQGLPIADAAKWLAMEEDEIESLSEYHG
FAIKSFQEPYIVKEGPFLNGDEDYPTKCSKLVDMKKSRRIVEDVLGSSQVISLSSEATKE
ILMTKTKKPEPKNISYAEKESPARHVPAIEVTKSVSEVDEKGPNFEVVSSPRDIRQKKQM
IQAPIFSSPEDVRQKQQTIQIPIFRQYSEGPRRASAVSPSLRAFSSFTPQPDKADTMKKP
NYDALFSNSPEGLMHSGMEQMPLQIESKKAVQERSSVGTYSSRLEYPVFQNMVTDKLEDE
EPPDLHQVDENNDVMENSQQEEIEEAKLKLILRLWKRRSLKLRALREKKQLAANAALNSL
SLGPPIQLKTDQPNTSGEFDIDLVLRERYKKHGQSWSRLNVSDVIADILGRRNLDARCLC
WKTVVCSQMNNLEGDELGQRSHVSGAAPWLLSKLMPSANDVDDDDEDLVISSPGVSIWKK
WVRDQSGSDLNCCLSVVKDASSDNPSESVSGASAILFLTSESIPWKLQKVHLHNLLMSIP
YGSCLPLLILSGSYKKNVDDSTIVDNLGLHDLDKSRISSFHVVPLVENQQMGQWDGFFSD
NRLREGLRWLASESPLQPILHHVKTRELILTYLNSSLDPLDKMKDYEVGPDHCILAFNEA
LDWSQKKIAAAVESNPSSWPCPEIALLEEFSDEYRFVKWCLPIVGWSSSEKVEPLMSALG
DCRLPTFPDSISWLPRCNAGNEIENLRDELENGLIEYLTHSSTMMGPALAIKEAHVMLQR
SCRLERQDSCCYIVPNWIMIFRRIFNWRLMGLANGAFSSAYVLESPHLNTVFGNLGKLGL
EDTGPSPCYLNQPTLDEVIEVGCGPLSSHRGRPLLESGPALPETSPDGEIHETPNANDWM
EDEQSLAHDGEAEIENVSHENGRLENAGREMVVTGEVTKGAENLSILLEQCKMLQNVIDE
KLSIYF
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atgtacccgggatttagcaaggcgtcaggaccaacaggaccgccgggatcgcggccacta
ttcggaaacttcggcagcggtcggccgccatcgccttctccgccgaccaaccctcctttt
tccgacgctgctccgctgcgctctccttccagggggcctgaagctctaggtcctttggcc
tttgaaagagttcgttctgctgcgagtcatccttacccgtttgaaggagtccataggggg
cctgaagctccagggcagctgtattctcctcctttaggctttggaagagttcgtcctgct
gcgagtcaaccttacccttctgcgggagtccatagggggcctgaagctccagggcaactg
cattcaccgcatttgacctttgaaagagctcgtcctgctgcaagtcattcttacccatct
gcaggagtccataggtccacagattctcatcctacttgggatggtgggcagcaatcctcc
tttaagaattatgatacccaggctcatcaaaggacatctgccgtcacatcatttgttgtt
tctcgtaattctggaactagtgttactgccaaggtgtccagattccaagacactgaagag
atcagatcgcctccctttctgtctaaagatgtcaatttcagaaattccactcaaggtgtc
cctagaagtcacttagttactccgagaatacgatcgcctcccttggtctcttatgaggat
ttgcatccttctgttggagttgaagatcgcttagtttctccaagaatacgatcgcctccc
ttggtctcttatgaggatttgcatcctgctgttggaattgaagagcatgcacttccctct
tctgaagtggatagtcgtcgggagttacttgatcatactgaattgcgggctcctcaagaa
ccttctctagtatcaccttttgatgggtcttatggtactggtagaaattttcctctgaaa
catgacaatggtcaagtcccgaaaagaacaaggccttctgtatctcctgttgggttcaat
agtagatcaaataccagttttagtactcctgattctcgggtacacaaaaagcctttgcaa
tctgcaagcaatactatttctgaagctgctgcaagaaatttgaccagcgtcccggtggcc
aaaagaacaaggtcacctcctttacttcctgaggatcaagtgtttcacggaaactcttat
gccactcaagatggtactgaacgagaaatgcaagccaaagctaagcggttagcccggttc
aaggttgaattaagtaaaactccacaaaacaatcctgatattgtagagccaggggtttct
gcaaatcgacatgagcaatctaatgttgaggggaacaaattagctgcatataaatctacc
aaactggctacggatggtactgatggcaatgctttacctgaggatgaaggcgtggagtcg
tctggtatcattattgggttgtgcccggatatgtgtcctgagtcagaaagggcagaacga
gaaaggaaaggggatcttgatcaatatgagcgcttggatggggatagaaatcaaaccagc
atgtcccttgctgttaaaaagtataacagaacagctgagcgagatgcaaacctgatacga
ccaatgccgatcctgcagaggacaattgattatttgctcaatttgcttgataagccatac
aatgataggtttcttagcatatacaacttcctatgggatcgaatgcgagcaattcgaatg
gacttgagaatgcagcacatttttaaccaagaggctattactatactggagcaaatgata
agacttcacataattgtcatgcatgaattatgtgaatactcaagaggagagggcttttct
gagggatttgatgcacacctcaatatcgaacagatgaataaaacatctgttgaattgttc
caattgtatgatgatcacagaaagaaaggaataaacattcctatggaaaaagagtttcga
ggttactatgcccttctcaagctggacaagcatcctgggtacatggttgaacctgcagag
ctctcacttgatcttgcaaagatgactccagaaataagacaaacttcagaggtgctattt
gcgcgtgatgtagccagagcttgcagaactggtaattttatagctttctttcgacttgcg
aggaaagcaagttacctccaagcttgcctaatgcatgcacacttctcaaagttacgaacg
caggcacttgcttctatacatgcaggtctccagaataaccaaggtctccctattgcagat
gctgccaagtggctggcaatggaggaagatgaaattgaaagcctttcagagtatcacggg
tttgcaataaagtcattccaagagccatacattgtgaaggaaggcccatttctcaatggt
gatgaggattatcctaccaagtgttctaaactggtcgatatgaaaaagtcaagaaggata
gtcgaggatgttttgggttctagtcaagtcatatccttgtcttctgaagcaacaaaagaa
attctgatgactaagacaaagaagcctgaaccaaaaaatatttcatatgctgaaaaggaa
agtcccgctcgtcatgtcccagccattgaagtaacaaaatctgttagtgaagttgatgaa
aaagggcctaattttgaagttgtttcatccccaagagatatcagacaaaagaagcaaatg
attcaagcaccaattttttcatctccagaagatgtcagacaaaagcagcaaacgattcaa
ataccaatttttcgtcaatacagtgaaggtccccgtagggcatctgctgtgtctccttcc
ctgcgggctttctcatcatttacaccccagcctgataaagctgataccatgaagaagcca
aactatgatgctctttttagtaactctccagagggactcatgcattctggaatggaacaa
atgccattgcaaattgagtcaaaaaaagctgtacaagagagatcatctgttggtacatat
agttcccgtttggaatatccagttttccaaaatatggtcaccgataagttggaagacgag
gaacctccagatctccatcaggtagatgaaaacaatgatgttatggagaattctcaacag
gaagaaattgaggaggcaaaactcaaattgatactaagattatggaagcgacgttctctg
aagctaagagcactgcgagagaaaaagcagttagcagcaaatgctgcattgaattcttta
tcattgggaccaccaattcaactcaagacagatcaaccaaacacttctggcgagtttgac
attgatctcgttttgagggagagatataaaaagcatggtcagtcatggtcaagacttaat
gtttcagatgtaatagcggatatactaggcagaagaaacctggatgctagatgcctatgc
tggaaaactgttgtatgttctcagatgaacaatctagaaggtgatgaactggggcagagg
agccatgtctcaggagcagccccctggttgctttcaaagctcatgccttcggcaaatgat
gtggacgatgatgatgaggatcttgtaatttcatcccctggtgtctcaatatggaagaaa
tgggttcgtgaccaatctggttcagatctgaactgctgtttgtctgtggtcaaggatgca
agttctgataatccaagtgaaagtgtatccggtgcaagtgctattttgtttcttacatct
gaaagcatcccttggaaattgcaaaaagtccatcttcataaccttctgatgtcaatacct
tatggatcctgcttgccccttctgatcttaagtggctcatacaagaaaaatgttgatgac
tccactattgttgataatttgggtctccatgacttggataagtcaagaataagcagcttt
catgttgttccgcttgtagaaaaccagcaaatgggacaatgggatgggtttttcagtgac
aaccgacttagggaagggctacgatggcttgcaagtgaatcgccccttcaacccattctt
catcatgtgaaaacacgcgaactcattctgacctacttgaattcttcattggacccatta
gacaaaatgaaagattatgaagtaggtccagaccactgtatccttgccttcaatgaagcc
ttggattggtcacagaagaaaattgctgctgctgtggaatcaaatccatccagttggcct
tgccctgagattgctttgctggaggagttcagtgatgagtacaggtttgtcaagtggtgc
ctgccaattgtaggatggagctcatcggaaaaagttgaaccgctaatgtcggctctaggg
gattgtagacttccaacgtttcccgacagtatttcgtggctgcccagatgtaatgcagga
aatgagattgaaaacctgagagatgaacttgaaaatggcttgattgaatacctgacgcat
tcaagtacgatgatgggacctgcacttgctataaaagaggcacatgttatgctacaaaga
agctgccgacttgagcgccaggactcgtgctgctatatagttccgaattggattatgatc
ttccgacgaattttcaactggcggttaatgggtttagccaatggggccttctcttcagcc
tatgtcttggagagtcctcatcttaacacagtttttggaaacctgggtaagttggggctt
gaagataccggaccttcgccctgttaccttaatcagccgactctggatgaagtcatcgaa
gttgggtgcggccctctttcatcccatagaggacggcccttgctagaatctggtccagct
cttcctgaaacatctcctgatggtgaaatccacgagaccccgaatgcaaatgactggatg
gaggatgaacaaagtttagcgcacgatggtgaagcggaaatagaaaacgtatcccacgaa
aacgggaggttggagaatgctggcagagaaatggtggtgactggagaagtgaccaaggga
gctgaaaatttaagcatattgctagaacagtgtaaaatgttacagaatgtgatagacgag
aagctgtccatttatttctaa
DBGET
integrated database retrieval system
