Malus sylvestris (European crab apple): 126608310
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Entry
126608310 CDS
T09027
Name
(RefSeq) U3 small nucleolar RNA-associated protein 21 homolog
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
126608310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
msyl03009
]
126608310
Ribosome biogenesis [BR:
msyl03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
126608310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Utp21
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
EIF3I
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_VPS8
PEP5_VPS11_N
Beta-prop_EIPR1
Beta-prop_WDR75_2nd
NBCH_WD40
Beta-prop_LRRK2
WD40_like
Beta-prop_SCAP
Beta-prop_IP5PC_F
VID27
WD40_RFWD3
WDCP
Motif
Other DBs
NCBI-GeneID:
126608310
NCBI-ProteinID:
XP_050132130
LinkDB
All DBs
Position
16:complement(23829436..23838910)
Genome browser
AA seq
904 aa
AA seq
DB search
MGIFEPFRAIGYTTSSVPFSVQRLGTETFVTVSVGKAFQIYNCAKLSLVLVGPQLPKKIR
ALACYRDYTFAAYGNEIAVFKRAHQVATWCSHSTKVNSLLLFGEHILSVDVEGHLFIWAF
KGIDENHSPIGHVMLDNNFSPSCIMHPDTYLNKIIIGSQEGSLQLWNISAKKKLYEFKGW
NSSICSCVSSPALDVIAVGCADGNIHVHNIRYDEELVTFSHSTRGAVTALSFSTDGQPLL
ASGGSSGVISIWNLEKRRLQSVIRDAHDGSVLSLHFLVNEPVLMSSSSDNSIKMWIFDTT
DGDPRLLRFRSGHSAPPQCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHISKR
AKKLKMKEEEIKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILKPR
PENPTPVKACAISACGNFAILGTADGWVERFNLQSGISRGSYTDTSERGSFAHDGEVVGI
ACDSTNTVMISAGYHGDIKVWNFKGRDVKSRWEVGCSVVKIVYNRLNGLLAVVADDLIIR
LFDVVASRMVRKFEGHMDRITDMCFSEDGKWLLSSSMDGSLRVWDVILARQIDALHVDVA
ITALSLSPNMDVLATAHVDQNGVYLWVNQSMFSGASKVDSYASGKEVRNVKLPSISSTKG
SLEEDSDEPIVDHPESKDAPAFTTLDLQIPDLVTLSLLPKSQWQSLINLDTIKERNKPIE
PPKKPERAPFFLPSIPSFSGEILFTGLENEEAKGDDVEHTRIKSGLAPSQFLQHLQSSAE
MKNFSAFTDYIKSLSPSTLDMELRMLQIVDDEDEEELESRPELLSIELLLDYFIHETWCR
NNFDFVQAVIKVFLKIHGETIRCQSRLQDKARELLDIQCKTWQRVEKLFQSTSCVVAFLS
NSRF
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgggaatattcgagccgttcagagcaatcggctacacaaccagctccgtccccttctct
gttcagcggctcggcaccgaaaccttcgtcactgtctccgtcggcaaggctttccagatt
tacaactgcgcaaagctcagtctcgtcctcgttggtccacaattgccgaagaagattcga
gctcttgcttgctaccgtgattatacatttgctgcatatgggaatgagatagccgttttt
aaacgagctcatcaggtagcaacatggtgcagccatagtaccaaggtcaattcgttgcta
ttgtttggagagcatatcctaagtgttgatgttgaaggtcatctgtttatatgggcattc
aaaggaattgatgagaaccattctccgattggacatgttatgttagacaacaactttagt
cctagctgtataatgcatccggatacctacctaaataagattattattgggagtcaggaa
ggttcacttcaactttggaacatcagtgcaaagaaaaaactatatgagttcaagggatgg
aattcttctatctgcagttgtgtttcatctcctgcactagatgttattgcagttggttgt
gctgatggaaacattcatgttcataacattcgttatgatgaagagctagtcacattttct
cattcaacacgaggtgctgtgactgccttatctttcagcacagatgggcagcctctacta
gcatctggaggttcttcaggtgtcataagcatatggaatcttgaaaaaagaaggcttcaa
tcagtaataagagatgcacatgatggttctgtactttcacttcactttcttgtgaatgaa
cccgtgctaatgagttcatcatctgacaattccatcaaaatgtggatttttgacacaact
gatggagatcctcgacttttacgcttcagaagtggtcatagtgctcctccacaatgcata
aggttttatgcgaatgggaggcacattctatcagctggtcaggaccgtgcatttcgcctt
ttctctgtaatacaggatcagcaaagtagagagctttctcagcgtcacatatccaaacga
gcaaagaaactgaagatgaaggaggaagagataaaactgaagcctgtcatcgcttttgat
tgtgctgaaataagagagcgagattggtgcaatgtggttacatgccatatggatactgca
caggcatatgtatggagacttcaaaactttgttcttggtgagcatattctgaagccaaga
cctgaaaaccctacaccagtgaaggcttgtgccatcagtgcatgtggcaattttgccata
ctagggacagcggatggttgggttgagcggttcaacctccaatcaggaatcagtcgaggc
agttacacagacacgtcagaaagagggagctttgcccatgatggggaagtggttggaatt
gcttgtgattcaacaaatactgtaatgataagtgcaggatatcatggagacataaaggtt
tggaatttcaagggacgtgatgtaaaatctagatgggaagttgggtgctccgttgtcaag
attgtatacaatcgtttgaatggtcttctggctgttgtggctgatgacttaatcatccgt
ttgtttgatgttgtggcatcaagaatggttcgtaaatttgaaggtcatatggatcgtatt
acagatatgtgttttagtgaggatggaaaatggcttttgtcatcaagtatggatggaagt
cttcgagtctgggatgttattttagcaagacaaatagatgcgttgcatgttgacgtagct
ataacagcattgtctctgtcaccgaatatggatgttctagcgactgcgcatgttgaccaa
aatggggtctatctttgggtaaaccaatctatgttttctggagcttcaaaagtcgattct
tatgcaagtggaaaggaagttaggaatgttaagttgccatctatctcttcaacaaaaggt
tctctagaggaggactctgacgagcctattgtggaccatccggaatccaaagatgctcct
gcttttactactcttgaccttcaaattcccgatcttgttactctctcattattgcctaaa
agccagtggcaaagcttaatcaatttagacactataaaggaacggaataaaccaattgaa
ccaccaaaaaaaccggaaagggctcctttctttttgccttcaattccctctttttcagga
gaaatattatttacgggattagaaaacgaggaggcgaaaggtgatgacgtagaacacact
agaataaagtctggtctggcaccatcacaattcttgcaacatcttcagtcatctgcagaa
atgaagaatttttcagcatttactgattatattaaaagtttgtctccatcgactctggac
atggagcttcgaatgcttcagattgttgatgatgaggatgaggaagaacttgaaagccgc
ccagaattactttcaatcgaactgctccttgattattttatacatgagacttggtgcaga
aacaattttgactttgtacaagctgtaatcaaggtgtttctgaagatccacggcgaaaca
attcggtgccaatcaagactgcaggacaaggcaagggagctcctagatattcaatgcaaa
acatggcaaagagtagaaaaattgtttcaaagtactagctgcgttgtcgcatttcttagc
aattcacggttttga
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