Malus sylvestris (European crab apple): 126609370
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Entry
126609370 CDS
T09027
Name
(RefSeq) uncharacterized protein LOC126609370
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03440
Homologous recombination
msyl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
126609370
03460 Fanconi anemia pathway
126609370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126609370
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
126609370
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
126609370
FA (Fanconi anemia) pathway
Downstream FA components
126609370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
Yippee-Mis18
Lipase_GDSL_lke
Motif
Other DBs
NCBI-GeneID:
126609370
NCBI-ProteinID:
XP_050133256
LinkDB
All DBs
Position
16:complement(38424962..38435549)
Genome browser
AA seq
1274 aa
AA seq
DB search
MVSATPGRNPNPTTKTSKNGYQIGGVQVEFPYHPYGAQLAFMSRVISTLDRAHRDGHCHA
LLESPTGTGKSLSLLCSTLAWQQAYKSKNQFANLLHSKPDPKAMTDPAAHGGGFVPEEEP
SSVQLSEKAKTKQSLANNKDEKKRATPTIYYASRTHSQISQVIREYRKTSYRVPMAVLAS
RKHYCTNAQVHGKENIDEECKLLLKNREVGCLEFKNVNKVKGHPSLQKGGCHEAHDIEDL
VKVGKSVKGCSYYAARSLSDDAELVFCPYNYIINPVIRGAMEVDIKGSIVVLDEAHNMED
VARDAGSVDIEEDILHKLQIELEQLCPVDVLVYQPLYETIQGLISWIEQRKNKLEKREFQ
YYVSCWTGDKALRELQEANVSQQCFPILLECAVKAFKAATDTESDIPHLSGMAVVILEGL
FSSLTYFFSRNGCHMVDFQLALQRYVKRDAGASGDWTHTLSLWCLNPAVVFKDIADLSLS
VILTSGTLSPMNSFSSELGLQFGTTLEAPHVIDVESQVWPAVISTGPGNLPLNASYKTAD
EYAFQDALGKSLEEIFKIVPGGCLVFFPSYKLMGKLCKRWHGTGQWSQLNEKKNLFVEPR
GGDQEEFDAVLKGYYDSICKGNKPVLGAKKSANKIAKKSHFAAFKCPRKSNIDGAAFLAV
CRGKVSEGIDFSDDNARAVIIVGIPFPNINDIQVVLKKKYNDTHKSSKSLLSGNEWYCQQ
AFRALNQAAGRCIRHRFDYGAVMLLDERYHKERNTANVSKWLKKSIRHYNNFDTSMEELK
SFFSDVKERVSKNMVNVSQSFEAKEEIIHSMGQNEGITKVKYQKLKKFDCCKRPENSEMK
HDGQLASQGCMEVQQFVRMDVDADHSKEIIDLDCCPQKNSGYPKPSLSMAFSDADPDISI
VKEIPNMDGIGSIYSPGSLNKDENSGLTSITIEASSHEMSFQSIALTNSSRASPNAQCSL
VATPKKNVTLKMHSSILETESSLNLSVNSHTQKRRKSMYSPLVNFVNGQSDTPDYETPDS
TSSVNYSMASRDANRKIEFSVETNGSEHKSKSNVPHVLTTNICVASSTSAGCVMDKRLQI
SCSLCKTPLGLPENQLHLACSLSSSSKCHLESLRTNVLKFHTGNTSSSGIPVIITDSASV
DQRLLNSEGATGQGIWCEEDGCVFSTIFCPFCSSHNNCLGVQVMAANRSNVHLLNKILFY
LDQLHIQNLKASSDRAPEDKDLLPAVDSSRDKASILNSFDRFSYSPQKQNMGGWRTTKSK
LKLPKRRLLPEAED
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atggtgtctgcaactcccggaagaaaccctaaccctaccactaaaacctccaaaaatggg
taccaaattggaggcgtccaggtggagttcccgtaccacccgtacggtgcccagctggca
ttcatgagcagggtcatctccactctcgatcgagctcacagagacggtcattgccacgca
ttgctcgagtctccgaccggaaccggaaaatcgctttctcttctctgctccactctcgct
tggcaacaggcttataagtccaagaatcagttcgccaatctcttgcattccaagcccgat
cccaaggccatgaccgatccggcggctcacggcggcggatttgttcccgaagaggaacct
tcaagtgttcagttatcggagaaggcaaagacaaagcaatccttggcaaacaataaggat
gaaaagaaaagggcaacacctaccatatactacgcatcgaggacacactcacaaatttct
caagtgatacgtgagtatcggaaaacttcctaccgggtgcctatggcagtgctggcctca
aggaagcattactgcacaaatgcacaagtacatgggaaagagaatattgacgaagaatgt
aagctgcttttgaagaaccgagaggttggatgcttagaatttaaaaatgtaaacaaagtc
aaaggccatccatcacttcagaaaggaggctgccatgaggcccatgatattgaagatctt
gtaaaagttggaaaatctgtgaaaggttgttcatattatgcagcacgatctttgtcagat
gatgcagaattggttttttgcccatataactacatcattaatccagtaattcggggagca
atggaagtagatattaagggatccattgttgttctcgatgaagcccacaatatggaagac
gttgctcgtgatgctggtagtgttgatattgaagaagacattttgcacaaattgcagata
gaactagagcagctttgcccagttgacgttttggtataccaacctctatacgaaacaata
cagggcctcataagttggattgagcaaaggaaaaataagttggagaagcgtgaatttcag
tactatgtctcttgttggactggcgataaggctttgagagagctccaagaagctaatgta
tcacagcagtgcttcccaatcttacttgaatgtgctgtgaaggcattcaaagctgctaca
gatacagaatcagatataccacatttaagtggcatggctgttgtgatattggaaggattg
ttctcttcgcttacttactttttctcaagaaatgggtgtcatatggttgattttcagctt
gctttacaacgatatgttaaaagagatgctggagcttctggcgattggacgcatacctta
agtttgtggtgtttgaatcctgctgttgtgtttaaagatattgctgatctttccttgtca
gtcattttaacatcagggactctgtcacctatgaattccttttcatctgagcttggtctt
cagtttggaacaactctggaagctccacatgttattgatgttgaatcacaagtttggccc
gctgttatttctactggcccaggtaacttaccattgaatgcaagttataagacagcagat
gaatatgccttccaggatgcactcggaaaatccttggaagaaattttcaagattgttcca
ggtgggtgtcttgtgttcttcccaagttataagctgatgggaaaactatgcaagcgttgg
catggaacaggacaatggtctcagttaaatgaaaaaaagaacctttttgttgagccaaga
ggaggagaccaggaggaatttgatgctgttttgaagggttattatgattcaatttgtaag
ggtaataaaccagttcttggggcaaagaaaagtgccaacaagatagcaaaaaaaagtcac
ttcgctgcattcaagtgtccacgaaagagtaacattgatggagctgcttttcttgctgtg
tgccgaggaaaggtttcagaaggaattgatttttcagatgacaatgctcgggcagtgata
attgtcgggattccgtttcccaacataaatgatattcaagttgtcttaaagaagaagtat
aatgatacacataagtcatccaaaagccttttgagtgggaacgagtggtattgccagcaa
gcctttcgagctctaaatcaagctgcaggacgttgcattcgccataggtttgattatgga
gctgtcatgttattagatgaacgctatcacaaggaaagaaatacagcaaatgtgtcaaag
tggctaaagaaatccatcagacattataacaactttgatacgtcaatggaggaattaaaa
tcctttttcagtgatgtcaaggaaagagtaagcaagaatatggttaatgtttcacagagt
tttgaagctaaagaggaaattattcactctatgggtcaaaatgaaggaattacaaaagtg
aaatatcagaaattaaagaagttcgattgttgcaaacgaccagagaattctgaaatgaag
catgatggccaactggcatctcaaggttgtatggaagttcagcaatttgtgcgaatggat
gtggatgctgatcatagcaaggaaataattgatctagattgttgtcctcagaaaaattca
gggtacccaaagccatctttgtccatggcattctctgatgcagatccagacatctccatt
gtcaaagaaatccctaatatggatggaattggttccatatacagtccaggatccttaaat
aaggatgagaattctggtttaacttcaatcacaattgaggcttcttctcatgaaatgtca
tttcaatcaatagccttgaccaatagtagcagagcttctccaaatgcccagtgcagcctt
gtagcaactcctaaaaagaatgtgactttgaagatgcacagctcgatactagaaacagaa
tcatctttgaatttgagtgttaattctcatacccaaaagaggagaaagtcaatgtattca
ccactggtcaacttcgttaatggacagtctgatactcctgattatgaaactccagattct
actagttctgtaaattactcaatggctagcagagatgcgaatcgcaaaattgaatttagt
gttgagactaatggttcagaacacaaatctaagtccaatgttcctcatgttctcacgact
aatatttgtgttgcttcatccacgtcagctggttgtgtaatggataaaagactacaaatt
tcttgctcactctgcaaaaccccgttgggacttcctgagaatcagctacatctagcatgc
tctttgtcttcttcgtcgaaatgtcatttagaatctcttcgtacgaatgtattaaagttt
cacacaggaaatacatcctcatcaggaatacctgttattataactgacagtgcatcagtt
gatcagaggctcttgaattctgaaggtgctactggacagggcatatggtgtgaagaggat
ggatgtgttttcagtaccatcttctgccccttctgcagtagccacaacaattgccttggt
gtacaggtcatggcagctaacaggtcaaatgttcatttactcaacaagatactgttttac
ttagatcagttgcatattcaaaatcttaaagcatctagtgatagggctccagaagacaag
gatctcttgcctgcagttgattcaagtagggataaagcctccattctaaattcctttgat
agattctcatactcgccgcaaaagcagaacatgggaggctggaggactacaaaatcaaag
cttaaactacccaaaagacgcctacttcctgaagcagaggactaa
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integrated database retrieval system
