Malus sylvestris (European crab apple): 126610445
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Entry
126610445 CDS
T09027
Name
(RefSeq) sister chromatid cohesion protein SCC2-like isoform X1
KO
K06672
cohesin loading factor subunit SCC2
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
msyl03036
]
126610445
Chromosome and associated proteins [BR:
msyl03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
126610445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PHD
PHD_2
PDS5
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
126610445
NCBI-ProteinID:
XP_050134452
LinkDB
All DBs
Position
17:complement(4693043..4705233)
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AA seq
1807 aa
AA seq
DB search
MSYPVVTSSSSSGSAHGGISLSNTVHSEVAPCLPLPSLPVFCGASDHLRLFDEPSRNSAW
LNRPDAAVASRIADLLRETDVSYLNLREDAGAVPYGYGEPLKLHDVVLQYNPDAFEYNSP
GPIKGQVPVSSTVADKKPFKPSIPILKPSQRDYSVSDNNQLNDTPPNDISTPSSRKPKSK
KKASDVMSSVGPDSAEIQDATIRSFCELVEEFCGRAEIISDDREETEWLSMPLSDLRLLA
NEIMSLRAKKLLHLIPADTFVRLLRILDHQIHRAEGLTIIEYEQSNSDVVSSIQCALEAI
HAALAVMAHNQMPKQLYKEEIIERILEFSRHQIMDVMCAYDPSYRALHRPSQNGSLEVDE
DEEPDAEFGSASKKRRSIKTVKVQKSSFNRVSAAVNNILQKMCTILGLLKDLLLIERLSD
GCILQLVKTCFTTFMVDNIQLLQLKAMGLISGIFYSYTQHRTYVIDELIQLLWKLPVSKR
ALRAYHLPDEEQRQIQMITALLIQLVHYSANLPESLRQESSSNSILELSVNADYPTKGHE
AATEACCHFWTRVLQRFAGAKTQEASELKVMMENLVTDLLTTLNLPEYPASAPILEVLCV
LLLQNAGLKSKDVAARSMAIDLLGTIAARLKRDSLLCSRDKIWILQELVSDDGVDQTYPR
DACSVCLDGRVEKNVFVCQGCQRMFHADCMGVREYEVPNRSWHCQICLCRKQLLVLQSYC
KSQCKDEGIKDRSRSGRNTEVAFSITKPEVVQQMLLNYLQDTTSADDGHLFVRWFYLLLW
YKDDSKSQQKFMYYLARLKSKEIVRDSGTGFSLLTRDSVKKITLALAQKNSFSRGFDKIL
HLLLASLMENSPVIRAKALRAVSIIVEADPQVLGDKRVQSAVEGRFCDSAISAREAALEL
VGRHIASHPDVGLKYFEKVAERIKDTGVSVRKRSIKIIRDMCVSNANFSEFTSACIAIIS
RISDDESSIQDIVCKTFYEFWFEEPTGSQTQFFGDGSSVPLEVAKKTEQIVEMLRRMPSH
QPLVTVIKRNLALDFFPQSAKAVGINPSSLASVRKRCELMCKCLLEKILQVEEMNIQEVE
RRALPYVLALHAFCVVDPKLCAPASDPSQFVVTLQPYLKSQADNRVVAQLVESIIFIIDA
VLPLVRKLPRAVVEELEQDLKNMIVRHSFLTVVHACIKCLCAVSKVAGKGAAIVENLIQV
FFKRLDAQAVDNKQQVGRSLFCLGLLIRYGNSLPSNSDKTIDVVSSLSLFKKYLLVEDFV
IKVRSLQALGFVLIARPKYMLEKDIGKIIEATFSSSSDVRLRMQALQNMYDYLLDAESQM
GTDAASDNVIHYNVEGGNAVSVAAGAGDTNICGGIVQLYWDNMLARCLDLNEQVRQSAIK
IVEVVLRQGLVHPITCVPYLIALETDPLEANSKLAHHLLMQMNEKYPAFFESRLGDGLQM
SFTFIQSISTSSEHENKKVQAKASGNAKGKSDSVSLAQGRLGVSRIYKLIRANRTSRNKF
MSSIVRKFDSASWTPSVVPFLMYCTEILALLPFTTPDEPLYLVYSINRVVQVRAGALEAK
LKALTLHLLQRGASHGNGIIEDGLAAQPLTGGMASLDLNGTVEQEPVFQPVTNYMSTEWN
GTLRQEPAYQSVSNQANPYEANMHVTGSSSSGGFSIDDVQKFQADCLAAIAVQLLLKLKR
HLKIVYSLNDARCQAFSPGEPPKPGEVLSRQNVPFDLSDTHTNLPTTYQELVQRYQEFKN
ALREDTIDFSTYTANIKRKRPAPRKGRKSVAGDDEGEDDDEDYSGGARRPSNIGRRGGYS
IRSRQRL
NT seq
5424 nt
NT seq
+upstream
nt +downstream
nt
atgagttatccggtagtcacttcgagctcgagctccggctcggctcacggcggcatcagc
ctctccaacacggtgcactcggaggtcgcgccttgcttgcctctgccatcgctgccggtg
ttctgcggcgcatctgatcacctccggctgttcgacgagccgagtcggaacagcgcgtgg
ctgaaccgccctgacgcagctgttgcgagtaggattgctgatctgcttcgagaaaccgac
gtgtcgtacttgaaccttagggaggatgctggggcagttccatacggttatggagaacct
ttaaaacttcacgatgtagttcttcagtacaatccagacgcctttgagtacaatagtcca
ggtcctattaaggggcaagtgcctgttagtagtacggtagctgacaagaagcccttcaag
cctagtatacctatactaaagccttctcaaagggactattccgtatctgacaataatcag
ctcaatgatactcctcctaatgacatatctacaccatcttctagaaaacccaaatccaag
aaaaaagctagtgatgttatgtcatcagtgggaccagattctgctgaaattcaagatgct
accatcagaagcttttgtgagttggtggaggagttctgtggcagagctgaaattatcagt
gatgatcgggaagaaactgagtggttatctatgcctctttcggatcttagactgcttgca
aatgaaataatgtctcttcgagcaaagaagcttctacatttgattcctgcagatactttt
gttagattgttaaggattttagatcatcagatacatcgagctgaaggcttgactataatt
gaatatgagcagtcaaattcagatgtggtttcatcaatacaatgtgcactggaggccatt
cacgcagcattagcagtaatggctcataaccagatgccaaaacaactatataaagaagag
atcattgaaaggattctggagttttccaggcatcagataatggatgttatgtgtgcttat
gatccatcttatcgtgctttgcataggccaagtcaaaatgggtcgcttgaagttgatgaa
gatgaagagcctgatgctgaatttggctcagcaagcaagaagagacgcagtatcaagacc
gtgaaagtgcagaaatcctcatttaacagggtctctgctgctgtgaataatattcttcag
aaaatgtgcaccattcttggtttactcaaggatttgttgttaatagaaaggttgtcagat
ggttgtatcttacaactagtgaaaacatgcttcacaacatttatggtggataatatccag
ctcttgcaactgaaggcaatgggtttgatcagtgggatattctattcatacactcagcat
cgcacatatgtgatagatgaattaattcagttgctttggaagttgccggtctcgaagcga
gctttgagagcatatcacctacctgacgaagagcaaaggcagattcagatgatcactgct
ttgctgattcagttggttcactatagtgcaaaccttcctgaatcattaaggcaggaatca
agtagtaattctatcttagaactctctgtcaatgccgattatccaactaaaggtcacgag
gcagcaacagaggcatgttgtcacttttggactcgtgtacttcagcgctttgctggtgca
aagactcaggaagcttcagagttgaaagtaatgatggagaatcttgttaccgatctcttg
acaacattgaatttacctgaatatccagcttcagctcctattctggaggttctttgtgtc
ttgttactccagaatgctgggctgaaatctaaagacgtagccgcacgttcaatggctata
gaccttctcggcacaattgctgcgagattgaagcgtgattctctcctttgcagtagggac
aaaatctggatacttcaggagttggttagtgacgatggggttgatcagacatatccaaga
gatgcatgctcagtttgtttagatggtagggttgaaaaaaatgtctttgtttgtcaaggt
tgtcagagaatgtttcatgctgattgtatgggagtgagagaatatgaagttccaaatcga
agttggcactgtcagatatgcctctgcaggaagcaacttcttgttttacaatcctactgt
aagtcacaatgcaaagatgaaggaataaaggatcgaagtcgttcaggaagaaacactgaa
gttgcgttttcaattacgaagcctgaggtagtccaacagatgcttttgaattaccttcaa
gataccacatcagctgatgatgggcatctctttgttcgctggttttatctcttgttgtgg
tacaaggatgattcgaaatcacagcagaagttcatgtactatcttgctagactgaaatca
aaagaaatagttcgggattctgggactggtttttcattattgacaagggattcagtcaag
aaaattactttagcattggcacaaaaaaactctttctccagagggtttgataagattctt
catttgcttctggcaagcttaatggagaattctcctgtaatcagggccaaggctttacga
gcggtcagtatcattgtagaagctgatccgcaggttttaggagacaaacgcgttcaatca
gctgttgaaggaaggttttgtgattccgcaatttccgctagagaagcagcactggagctt
gtaggaaggcatattgcttctcatcctgatgttggtttgaagtattttgagaaggttgct
gagagaattaaagatactggagtaagtgttcgaaagcgatctatcaaaatcatacgagat
atgtgcgtttcaaatgcaaacttctccgaatttacaagtgcttgcattgctatcatctcc
cgtattagtgacgatgaatcaagcatacaggatattgtttgcaagacattttatgagttc
tggtttgaggaacctactggttcacaaactcaattctttggagatggtagctctgttcca
ttggaggtggctaaaaaaactgaacagatcgttgagatgttgaggaggatgccaagtcac
caacctcttgtgacagtcattaaacgcaacttggcccttgatttttttccacaatcagct
aaagcggttgggatcaacccttcctcacttgcatcagtacgcaagcgctgtgagttaatg
tgcaagtgcttactggaaaagatattgcaggtagaggaaatgaatatccaggaggtagag
aggcgggcccttccgtatgtgctagctttgcatgcattctgtgttgtggatccaaagctt
tgtgcaccggcttctgacccttcacagtttgtggtcactcttcagccttatctaaagagt
caggctgataatcgagtggttgcacaattagtggagagtataatctttataattgatgct
gttcttcctttggtaagaaagttaccgcgagctgttgtggaagaacttgaacaggactta
aagaacatgattgttcggcattccttcttgactgttgttcatgcttgcataaagtgcctc
tgtgctgtgagtaaagtggcaggaaaaggtgctgctatagtggagaatcttatccaggtg
ttcttcaaacgtttggatgctcaggcagtagataacaagcagcaagtggggcggtctctt
ttctgtctcggattgcttatccgttatggcaactctttgcccagtaactccgacaaaaca
attgatgttgttagcagtctcagcttgtttaaaaaatatcttctagtggaggattttgta
ataaaggttcggtcattgcaggcattgggctttgttctaatagctaggcccaaatatatg
ttggaaaaagatattgggaagataatagaggcaacattctcttctagctctgatgttcgt
cttaggatgcaagcattgcaaaacatgtacgactatcttcttgatgccgaaagtcaaatg
ggaacagatgcggctagtgataatgtgattcattataatgtggaaggcggcaatgctgta
tctgttgctgcgggtgctggagatactaatatctgtggtggtatagttcagttgtattgg
gataacatgttggcaagatgtttagaccttaatgaacaagttcgccaatctgcaattaag
attgttgaagttgtactgcggcaagggctcgtacatcctattacatgcgttccctacctt
attgctctcgaaacagatccactggaggccaattcgaagttagctcatcatttactgatg
caaatgaatgaaaagtaccctgcatttttcgaaagccgcctgggagatggccttcaaatg
tcttttactttcatacagtccattagtactagttctgaacacgagaacaaaaaagttcaa
gcaaaggcttctggaaatgcaaagggaaaatctgatagtgtttctctcgcacaaggcaga
cttggggtttctcgaatctacaagcttattcgtgctaaccgaacttcaagaaacaaattt
atgtcttcgattgttcgcaagtttgatagtgctagctggacaccttcagtagtccctttc
ctgatgtactgcacagaaatactcgccttgctacccttcacaacacctgatgaaccgctt
tatttggtctattctataaatagagtagtacaagttagggctggggcactcgaagcaaag
ctgaaagctctgactttgcatttgttacaaagaggtgcatctcatggcaacggcataatt
gaagatggcttagctgctcagcctcttacgggaggtatggcatcattggacttgaatggg
acagttgaacaagaaccagtgttccaacctgttacaaattatatgtcaacggagtggaat
ggtacattacgacaagagccagcatatcagtctgtctccaatcaagctaacccgtatgag
gcaaacatgcatgttacgggctctagcagttccggtggcttctcaatagatgacgtacag
aaattccaggcggactgccttgcagctattgcagtgcagcttcttttgaaactaaagaga
cacctaaaaattgtgtatagcctgaatgatgcaaggtgccaggctttttctccgggtgaa
ccccctaaaccgggagaagtactctcgaggcagaacgtcccttttgacctcagtgatacg
cacaccaatttgcctacaacttatcaagaattggtacaaagatatcaggaattcaagaat
gcattgagggaggatacgattgatttctctacttacactgcaaacatcaagagaaaacgc
ccggcccccagaaaaggacggaaatctgtggctggagacgatgagggcgaagatgatgat
gaggattattcaggtggggctcggaggccgagtaatattggaaggagaggtggctacagt
atcagaagtcgacagcggttatag
DBGET
integrated database retrieval system
