Malus sylvestris (European crab apple): 126610528
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Entry
126610528 CDS
T09027
Name
(RefSeq) protein RST1-like
KO
K27498
focadhesin
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126610528
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
126610528
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DUF3730
TPR_TNPO3_IPO13_3rd
Motif
Other DBs
NCBI-GeneID:
126610528
NCBI-ProteinID:
XP_050134567
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All DBs
Position
17:2233890..2244438
Genome browser
AA seq
1888 aa
AA seq
DB search
MGLMGMQMNATSFQLSASLPETVTCAASPSLSASLSMDSYTPLLEKTRVPQPSLQKYAVI
SIFSKLRSAPKYLDSDSEPGREAISQCLHSTSPAVVDQSVRELCSLVADSKIDISRGFLE
LQSALEGSAQKFVDLFVKGLGFLVRFGFQRSNGKWSFSSVAETHPFVKILSCRSDAEPEL
VQQVLLFMAKNKQLGMVGICDFLRPFLNYSILRIPFSETSALFARHLISSMASLCCSIPL
DTLPFLKMLTDCLVYVPLSNSEDFRNFIYFAECMVDAYTVVLRNLAGTGLLIAEAHDCGL
ELFDKILLISSAGHMHSGLIEPVVEMSKHLVITQKDIGLPYVPKVSSAMLTLFIILVQSE
LEHDQLSTLKLLHLLLKWKYGDEYVHRTACPLSEELLFIFPVISLLSSTSKYVKGAATDV
LVLLQKLLVTVLIAPKHKPAIEAGYPSLSTPGSIVFRILQRLWFQDPSLSSFFLNFASSG
RTDGKEIHDVSRSWPSQLREYTLWIVDRRKSSLPLSQSQERFITGMPLLLCAIAGVLVMH
EVLGSTALDSFAAIATMDPKVGAQLLLAILFYNNIFTRKDISRCGMLPKLLTTLPAPASH
SMMIPLVVQTILPMLQKDAKPTLYATAIRLLCQTWETNDRAFGSLQGVLLPKLLTELKSE
REICISMAASIRDVCRKNPDRGVDLILSVSACIENKDPIIQALGFQSLAHLCEADVIDFY
TAWDVITKHVLDYRADSVLAHSVGLLLRWGSMDAEAHPEVSKNVLQILWSVSLSAHPGLE
SQWEKARVSSLEALAQYEISYIEQNIQDFKNRSTELLFSEANITVLRALEELQVKVITYE
HLTRRRLVKEKRVLGSKIEKLLDVFPQVIFSSGKKSNARELPGAALLCLSFTPKDVNTVR
TSRGFRDTHAGYEKALVELASSIQLSRNIFVALISLQSWKSFVRRWLGADILSFDNQISS
VVLDKTAKAASDILKSMIKAAEEAIPRSAENIALAVGALCAVLPPSAHTIKSAASKFLLK
WLVQPEHEHRRWTAAISLGLISSCLHVTDHKQKFENITGLVEVMCRSSSTLVRGACGVAL
GFSCQDLLTRVDAAGKSDMEKETGKMSETDLLGMIVKALSLVIGQLTQFPSDVLESLSAY
FPPSTFGIDVNTTSELSHENSDDFLEDIWGVAGLVLGLASTVGTMYRTGAHDAVLKIKGL
IVSWIPHMTTLVQGSGSCSRGSEIVLSVGSCLALPIIVEFCQRVELMDDNEVHLLVNGYK
ELISELVSVKKYGTFYQSLLMSSCVGAGNLLACTLNGGLHFIEVEHVKGLLELFRKCYSN
PYPPLVHLGGMLGLVNALGAGAGILFDMQPPTSVQTAYDHKESCYLMGPLLSSPTCEQYL
TSLMQDLFLVAQNSDDRQLQHYAAWAVSFLRNHLFTKEVVNVDNSSNTDAGGSKSISQSF
ADDSSVLKLSSWLMHLTSSGTGNAPHVCTVVTVIRCLSQAPRLPTLDWGAIIRRCMRYEA
QVAKLFPTDVSLEKGSLREECVKFSLVHANKFDPLLSFLDELSDLSRFRTLELKLQSCIL
GHLVDLVKVFSGSRLEKMFDDVCSYFSSFTSYQSYDTNETSLLRISCWKGIYQCLDEASL
DSLEYISHIENCLEVLFSLMHVTQLAATAGEHFVEEWSEAVRCFGKARKSWLLNFLQVTQ
EDLQQKDGQLIQVLKKLQTKAKLVSVGSIPLTELGRLKSLILNTQSNGIWDVLIEVVAAL
QHADGSVKRQWLVDAVEISCVSTYPSTALQFLGLLSGSWSKYMPLLILDQHAVLSDLPVT
LSSLLSDSSWGGVVEFIVPSLLASTERIYNWTTHIKRGEDVPPDMQPIDKSESSTAVFLL
RVMHSTCVSLKHYLPLEKQLQLANMAVA
NT seq
5667 nt
NT seq
+upstream
nt +downstream
nt
atgggccttatgggcatgcagatgaacgcgacgtcgtttcaacttagcgcttccctccct
gaaacggtaacttgcgctgcttctccgtctctctctgcatctctctcgatggactcgtac
actccactgttggagaaaacgcgggttccccaaccgtcgctccagaaatacgccgtgatc
tcaatcttctcgaagctccgatccgccccgaagtacttagactccgactccgaacccgga
agagaagccatttctcagtgcctccactccacctcccccgccgtcgtcgaccaatcggtt
cgcgagctatgcagcctcgtagcggactccaaaattgatatctcccgcgggtttctggag
ctccagtccgcactcgaagggtccgcccagaaattcgtcgaccttttcgtcaaaggtttg
ggctttttggttcggtttgggtttcagaggagcaatggcaagtggtcgtttagttccgtg
gcggagactcatccgtttgttaagattctgtcatgccgatcggatgctgagccggaactt
gtgcagcaggttttgctgtttatggcaaagaataagcagttgggaatggtgggaatttgt
gacttcttaagaccgtttttgaattattcgattttaaggatacctttctcagagacttcg
gccttgtttgcaaggcatctaatatcgtcgatggcctctctttgttgctcaattcctctt
gatacactgcctttcttgaaaatgttgacggactgtctcgtatatgttccactcagtaat
tcagaagattttaggaatttcatatattttgcggaatgtatggtcgatgcatatacagtg
gttctgaggaatttggctggaactggattgctgatcgctgaggctcatgattgtggtttg
gaactgtttgataaaattcttttaatttcttcagctggccacatgcactctggtttgatt
gagcccgtagttgaaatgtccaagcacttagtgattacccagaaagatattgggttgcct
tatgtgcctaaagtatcatcagctatgcttacgttatttattatcctcgttcagtcagag
cttgagcatgaccaactatctacattgaaacttctccaccttcttttgaagtggaagtat
ggagatgaatatgttcacagaactgcatgtcctctgagtgaggagcttttattcatattc
cctgtcattagcctactgtcatctacttctaaatatgtcaaaggagcagcaacagatgtg
cttgtcctgttacaaaagctcttagtaacagttttgatagcaccaaagcataaaccagca
attgaagcaggatatccatctctaagcacacctggatctattgtttttagaatcttacag
cgtctatggttccaggatccttcattgtcgagtttcttcttaaattttgcttctagtggt
agaactgatggcaaagagattcatgatgtgtcaagatcttggccatctcaattacgagag
tacactttatggattgttgacagacgaaagtcttctctacctctctcccagtctcaagag
agattcattactggaatgcccttgttactctgtgcaattgctggggttttagtgatgcat
gaggtacttgggagtacggctttagattcatttgctgccattgctactatggatcctaaa
gtaggagctcaactattgctggctatcctattttacaataacatattcactagaaaagat
ataagtcgctgtggtatgttgcccaaacttttgacaacgcttccagcacctgcttcacat
tctatgatgattcctcttgttgttcagactatcttgccaatgcttcagaaagatgctaaa
ccaactttgtatgcgacagccatacgtttactttgccagacttgggagaccaatgaccgt
gcctttgggagtttgcagggagtgttgcttccaaagttgctcactgaattaaagtccgag
agagagatatgcatcagtatggccgcatcaattcgggatgtttgcagaaaaaatcctgat
aggggcgtggatctcatcctgtctgtttcggcttgcattgagaacaaagatcctataatt
caagctcttggttttcaaagtcttgcccacctttgtgaagctgacgtaattgatttttat
acagcctgggacgtcatcacaaagcatgttctggattaccgtgcagattcagttcttgct
catagcgttggccttcttctgaggtggggttcaatggatgctgaagcacatcctgaagtc
tcaaagaatgtcttgcaaatcctgtggagtgttagcttgtctgctcaccctggtctggag
tcacaatgggaaaaggcaagggtctcttccttagaggccttagcacaatatgagatatca
tatattgaacaaaacattcaagatttcaagaacaggagcacagagttacttttctctgaa
gcaaatattactgtactcagggctttggaagaacttcaagtcaaggtcataacttacgag
catcttacaaggcgaagattagtcaaggagaaaagagttttaggaagtaagattgagaag
ctactggatgtgtttccacaggtgatcttttcttcagggaaaaaaagtaacgctagagag
ctacctggtgcagccctgctatgtctttcctttactcctaaagatgtaaacaccgtaagg
acatcaaggggattccgagatacacatgctggatatgagaaggcattggtggaactagct
tcatccattcagctttcaagaaatatttttgttgcccttatttcactccaatcttggaag
tcctttgtgcgacgttggctgggggcggatatcttatcctttgataatcaaatctcctct
gttgtcttggataaaactgctaaagctgctagtgacattctgaagagtatgataaaagcg
gcagaagaggctattcctagatctgctgaaaatattgcactggctgttggtgcactttgt
gcggtcttgcctccatctgctcatactattaaatcagctgcctcaaaatttctgttgaag
tggttggtccagcctgaacatgaacaccgcagatggactgctgcgatttctcttggattg
atctcaagttgcctacatgtaactgatcataagcaaaagtttgagaatatcactggactt
gtcgaggttatgtgtagaagcagtagcacccttgttagaggagcttgtggggttgccttg
gggttttcttgccaagatcttctgaccagggttgatgctgctggtaaatctgacatggaa
aaggaaacaggcaagatgtcggaaacagacttgcttggtatgatagttaaggcattatcc
ctggtgataggtcagctcactcagtttccatctgatgttttggaaagtctgtctgcatat
ttcccacctagcacttttggtatagatgtgaatacaacttctgaactgtcacatgagaac
tctgatgacttcctcgaagatatctggggtgttgctggacttgttcttggtttggcgagt
actgttggtacaatgtacaggactggggcacatgatgctgttcttaagataaagggctta
attgtttcatggattccacatatgactactctggttcaagggtctggatcttgctctcgg
ggttctgagatagtcttatcagtagggtcctgtcttgcacttccaattatagtggagttc
tgtcaaagagtagaactgatggatgataatgaagtacatcttttagtgaatggctataag
gagctcatttctgaattggtctctgtcaaaaaatatgggaccttctatcaaagtttactg
atgtcatcttgcgtaggagccggaaaccttctagcctgtacactgaacggagggttgcac
tttattgaggttgaacatgtaaaaggtctactggaattgttcagaaaatgctattcaaat
ccttatcctcctttagtccatttgggtgggatgcttggacttgttaatgctctaggagca
ggtgctgggatcctgtttgacatgcagcctccaacctcagtgcagacagcttatgaccac
aaggaatcttgctatctcatgggtcctctactttcaagtcctacttgtgagcagtatttg
acatcgttgatgcaggatttgtttcttgttgcacagaattctgatgatcgtcaattgcaa
cattatgctgcatgggcagtttcgtttcttcgaaatcatttgtttaccaaggaagttgtc
aatgttgacaatagtagcaatactgatgcaggtggttcaaaatctatttcccaaagtttt
gcagatgacagttcagttttgaagctttcttcatggctgatgcatctcacttctagcggg
acaggcaatgcccctcatgtttgcacagtagtgactgtgataaggtgcctttcacaagct
cctaggctgccaaccttggattggggtgctatcatcagacgctgcatgagatacgaagct
caggttgctaagttgtttccaacagacgtatctcttgaaaagggatcccttagggaggaa
tgtgtaaagttctcattggttcatgcaaataagtttgatccacttctaagtttccttgat
gagctgtctgacttgtccagattcagaacacttgagttaaagctgcaatcttgtattctt
ggtcatcttgtagatctcgtcaaagtattctcaggttcaaggcttgagaaaatgtttgat
gatgtctgtagctacttctcttcatttacttcatatcaatcatatgacaccaatgagaca
agcttattacggatttcatgctggaagggtatctatcagtgtttagatgaagcttccctt
gactctctagagtacatatctcacatagaaaattgcttggaggtgctcttttccttgatg
catgtgacgcagttagctgccacagcaggagagcatttcgtagaggagtggtctgaagca
gttaggtgctttgggaaggctcgtaaaagttggttgttgaacttcctgcaggttacccag
gaggacttgcagcaaaaagatggacaacttattcaagttctgaaaaagcttcaaaccaaa
gctaagctagttagcgttggctccatcccattgactgagctgggaaggttaaagtctttg
atattgaacactcaatcaaatggtatttgggatgtgctcattgaagttgtagcagctttg
caacatgcagatggaagtgtcaaaagacagtggcttgttgatgcagttgaaatcagctgt
gtatcgacttacccttccacggcgctacagtttcttggattgctatctggtagctggagc
aaatatatgcctcttctgattctggaccaacatgccgtgctgagcgatttaccagtcacc
ctatcctctcttctctcagactctagttggggaggagttgtggaattcatcgttccttct
cttttagcatcgacagaacgcatttacaattggaccacacatatcaagcggggtgaggat
gtcccgcctgacatgcaacccatcgacaaaagtgagagttccacggcagttttcctactg
agagtaatgcatagcacctgtgtatctctgaagcattacctgcctctcgagaagcagctt
cagcttgccaatatggcggttgcttga
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