Malus sylvestris (European crab apple): 126610548
Help
Entry
126610548 CDS
T09027
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126610548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msyl03041
]
126610548
03009 Ribosome biogenesis [BR:
msyl03009
]
126610548
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126610548
Spliceosome [BR:
msyl03041
]
Complex A
U1 snRNP components
U1 related factors
126610548
Complex B
126610548
Ribosome biogenesis [BR:
msyl03009
]
Eukaryotic type
Pre-60S particles
Helicases
126610548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
126610548
NCBI-ProteinID:
XP_050134602
LinkDB
All DBs
Position
17:complement(2367332..2373043)
Genome browser
AA seq
667 aa
AA seq
DB search
MAATATAAGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYDRPTSSAPPSKPSS
AQSISSSVHVQQSSQGQRRPDEGDDRYSRGSNGGSKFDTGSRTQQTARSATVSHNTPSGT
LSSHGGSSVKGNGSDTGSGLSAEAYSLRHEISVVGDNVPPPFTSFESTGFPSEILREVQS
AGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRTRNNPQMGPTVLV
LSPTRELATQIQDEAVKFGKSSRISCVCLYGGAPKGPQLRDIDRGADVVVATPGRLNDIL
EMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEIPARRQTLMYTATWPKEVRKIAAD
LLVKPVQVNIGNVDELVANKSITQYVEVLTSMEKHRRLEQILRSQEPGSKIIIFCSTKKM
CDQLSRNLTRQFGAAAIHGDKSQSERDYVLNQFRSGRTPILVATDVAARGLDIKDIRVVI
NYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKYASDLIKVLEGANQCVPPEVREL
ASRGGGMNRFRRWGSGPSGGRDGGRGQNDSSYGGRDGGRGGGYGFTPSSGRYGQSNGYDR
GRSPSPVKASGYRARSRSPERFDKALPTGGGSAGGWSFHKAMMERERSSPPRRRSAEEAE
EGMIHPE
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggctgccactgcaactgctgctggtcctcgatatgctccggaggacccaactctcccc
aaaccatggagaggtctggttgatggtaaaactgggtatctttacttctggaacccggag
accaacgttacccaatatgataggccaacgagctcagctcctccatcaaagccctcttct
gcacagtctataagctcctcggttcatgttcaacaatcttcacaagggcaacgtcgtcct
gatgagggagatgataggtatagcagaggcagcaatggtggctcgaaatttgacacagga
tcaagaactcagcagactgcaagaagtgcaacagtttctcataataccccaagtgggaca
ctaagttcacatggaggatcttctgtgaaaggaaatggatcagacactggaagtggtttg
tctgctgaggcttatagtctccgccatgaaatatcagttgttggtgataatgtgcctcca
ccattcacttcatttgaatctactggcttcccatctgagattcttagagaggtacaaagt
gcaggtttctctgccccaactccaattcaagcacaatcttggccggttgctcttcaaagt
agagatatagtagccattgctaaaactggttcggggaagaccttggggtatttgcttcca
ggattcatccatctcaagcgcacccgtaataaccctcagatgggtccaactgtattggtt
ttatcaccaactagggagctggcaacacagattcaagatgaggcagtgaagtttgggaag
tcatcaaggatatcttgtgtgtgtttgtatggaggagctccaaagggaccacagttgaga
gatattgaccgaggagcagatgttgtggttgccactcctggccgcttgaatgatattctt
gaaatgaagagaatcagtctccatcaagtttcttatttagtgctggatgaggctgaccgg
atgctggacatggggtttgaaccacaaataaggaagattgtgaaggagatacctgctcgt
cgccagaccctaatgtataccgcaacttggccaaaggaggttcggaagattgcagcggat
ctactggtcaaacctgttcaggttaacattggcaatgttgatgaactggttgcgaataag
tctatcacacagtacgttgaagtactgacctcaatggagaagcacagacgactggagcag
atattgcgatcccaagagccagggtctaagataattatcttttgttcaactaagaagatg
tgcgatcaactttctcgcaatctaacccgccagtttggagctgctgcaattcatggcgac
aaatctcagagtgagagggattatgtgttgaatcaatttcgctctgggaggactccaatt
cttgtagcaactgacgttgcagctcgaggattggacataaaggacataagggtggttatc
aactacgacttccctactggagtagaggattatgttcacaggattgggagaactggaaga
gcgggcgccactggcctggcttatacattttttggtgatcaggatgccaagtatgcatca
gatctcatcaaagttttggaaggtgcaaatcagtgtgtccccccagaagttcgtgagctg
gcttcccgtggtggtgggatgaacaggttcagacgttggggttctgggcccagtggtggt
cgtgatgggggtcgtgggcaaaatgattcaagttatggtggaagggatggtggaagggga
ggaggatatggatttactccctcctctggcaggtatggtcaatccaatgggtatgacaga
ggccgcagtcccagccctgtcaaggcgtcaggatatagagcccgtagccgtagtcctgag
aggtttgacaaagctctgccaacaggtggtggctctgcaggtggttggagtttccacaaa
gcaatgatggaaagggagcggtcatcgcctccacgtagacgcagtgctgaagaagctgag
gagggaatgatacatccagagtaa
DBGET
integrated database retrieval system
