Malus sylvestris (European crab apple): 126610823
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Entry
126610823 CDS
T09027
Name
(RefSeq) uncharacterized protein LOC126610823
KO
K12589
exosome complex component RRP42
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126610823
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126610823
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
126610823
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
126610823
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
126610823
NCBI-ProteinID:
XP_050134911
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Position
17:complement(9836412..9839458)
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AA seq
287 aa
AA seq
DB search
MVGLSIGEKHFIQGGIAQDIRSDGRKRLTPRPINVKTGVISQANGSARVRMGATDVIASV
KAELGRPTALQPDKGKVFINVDCSPTAAPMFEGRGGEELSAELSVALRHCLLGGKSGSGA
GIELSSLVVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVNVAAGASGD
EQPEVDVSDEEFLQFDTSKVPVIVTLTKVGKHYIVDATSEEESQMSSAVSISVNRQGHIC
GLTKRGGAGLDPSIILDMVSVAKTVSEQLINTLDSQIAAAEAGEDES
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atggtgggactatccataggagaaaagcattttatacagggcggtattgcacaggacatt
cgttctgatggtcgaaaaagattgacgcctcggcccatcaatgtcaaaactggagtaatt
tcccaggcaaatggttcggcaagggtcaggatgggggctacggatgtcattgctagtgtg
aaggctgaacttggaaggccaactgcactgcaacccgacaaaggaaaggtctttataaac
gtcgattgcagtccaaccgcagcaccaatgtttgagggtagagggggtgaggagctgtca
gcagaactctcagtggctcttcgacattgcctcttgggtggtaaaagtggatctggtgct
ggaattgaactctcctctctagtagttgtggaaggaaagatctgttgggatctttacatt
gacggccttgttgtcagttcagatgggaatcttctagatgccctaggtgctgctataaag
gctgctttgagcaatacaggcatcccaagagtaaatgttgcagctggtgcatctggggat
gagcaaccggaggttgatgtaagcgacgaggagtttctgcaatttgacacatctaaggtc
cctgtcatagttacattaacaaaggtaggtaagcactatattgtggatgccacttcagaa
gaggaatcacaaatgagctcggctgtttcaatttccgtcaataggcaagggcacatctgc
gggttgaccaaacggggtggtgcaggccttgatccaagcatcattctcgacatggtatcc
gtggcaaaaacagttagtgagcagctgataaacacgttggattctcagatagctgccgct
gaagctggtgaagatgaatcgtaa
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